View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_7 (Length: 483)
Name: NF18852_low_7
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 242 - 467
Target Start/End: Complemental strand, 2059577 - 2059347
Alignment:
| Q |
242 |
ggatcatacccattcataatggagctcgactcagattctgcattcatctttcaagcttggt-----gttcgaaagattgtagaatacggaccaacgatta |
336 |
Q |
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| T |
2059577 |
ggatcatacccattcataatggagctcgactcagattctgcattcatctttcaagcttggtttggtgttcgaaagattgtagaatacggaccaacgatta |
2059478 |
T |
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| Q |
337 |
ttcccaagagcattcgagttatagcaagtttactaggaaaacatcga--tttaacataatcaaatgaccattgtttacgataagtgaatgtttatacttt |
434 |
Q |
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| T |
2059477 |
ttcccaagagcattcgagttatagcaagtttactaggaaaacatcgaagttttgta-aatcaaatgaccattgtttacgataagtgaatgtttatacttt |
2059379 |
T |
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| Q |
435 |
gtaatttcatccatagcatgaaatggaagaaac |
467 |
Q |
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| T |
2059378 |
gtaa-ttcatccatagcatgaaatagaagaaac |
2059347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 2059807 - 2059623
Alignment:
| Q |
10 |
attatactctacaattataatttcattaatcaagcatattttcttaggnnnnnnnnc--taatcaagcatatttaatttttataaacaaagttgtcttag |
107 |
Q |
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| T |
2059807 |
attatactctacaattataatttcattaatcaagcatattttcttaggaaaaaaaaaattaatcaagcatatttaatttttataaataaagttgtcttaa |
2059708 |
T |
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| Q |
108 |
ttaatgatttcagtttatgcgatcatagataaaattcaaatctaatacttagacatgtgtcttaagggcctagggcacatgttag |
192 |
Q |
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| T |
2059707 |
ttaatggttttagtttatgcgatcatagagagaattcaaatctaatacttagacatgtgtcttaaggacctagagcacatgttag |
2059623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 467
Target Start/End: Complemental strand, 2048396 - 2048348
Alignment:
| Q |
418 |
gtgaatgtttatactttgtaatttcatccatagcatgaaatggaagaaac |
467 |
Q |
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| T |
2048396 |
gtgaatgtttatactttgtaatt-catccatagcatgaaatagaagaaac |
2048348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 2035116 - 2035055
Alignment:
| Q |
396 |
aaatgaccattgtttacgataagtgaatgtttatactttgtaatttcatccatagcatgaaat |
458 |
Q |
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| T |
2035116 |
aaatgacatttgttttcaataagtgaatgtttatactttttaa-ttcatccatagcatgaaat |
2035055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 458
Target Start/End: Complemental strand, 2039194 - 2039153
Alignment:
| Q |
416 |
aagtgaatgtttatactttgtaatttcatccatagcatgaaat |
458 |
Q |
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| T |
2039194 |
aagtgaatgtttatgctttgtaa-ttcatccatagcatgaaat |
2039153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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