View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18852_low_8 (Length: 464)
Name: NF18852_low_8
Description: NF18852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18852_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 252 - 447
Target Start/End: Original strand, 48043874 - 48044080
Alignment:
| Q |
252 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcac-aaaaaatggatgataattgt |
350 |
Q |
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| T |
48043874 |
aagtcatggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaaatggatgataattgt |
48043973 |
T |
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| Q |
351 |
cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtag----------tttcgattacaagtttgtaacaacattgatgtga |
440 |
Q |
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| T |
48043974 |
cctctgtgatacctggccatataaatgatctaaatgaagttcaaattaggtagtagtaggtgctccttccgattacaagtttgtaacaacattgatgtga |
48044073 |
T |
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| Q |
441 |
caatatc |
447 |
Q |
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| T |
48044074 |
caatatc |
48044080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 48043619 - 48043734
Alignment:
| Q |
53 |
gcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctagaa |
151 |
Q |
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| T |
48043619 |
gcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctagaa |
48043718 |
T |
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| Q |
152 |
ccagcagtggaatccc |
167 |
Q |
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| T |
48043719 |
ccagcagtggaatccc |
48043734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 48051600 - 48051701
Alignment:
| Q |
61 |
tttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtg |
160 |
Q |
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| T |
48051600 |
tttgaaatcataggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatcttgttacttagaaccagcagtg |
48051699 |
T |
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| Q |
161 |
ga |
162 |
Q |
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|| |
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| T |
48051700 |
ga |
48051701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
| Q |
78 |
acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag |
155 |
Q |
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| T |
48056891 |
acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag |
48056968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
| Q |
99 |
tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc |
166 |
Q |
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| T |
48045485 |
tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc |
48045552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 48043794 - 48043832
Alignment:
| Q |
212 |
ggaattgaatctgagatcacccttatcactccattcttt |
250 |
Q |
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| T |
48043794 |
ggaatcgaatctgagatcacccttatcactccattcttt |
48043832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 349
Target Start/End: Original strand, 48057003 - 48057095
Alignment:
| Q |
257 |
atggagttcacttcttgaagcaggtaaattctcataagcggctgcatcaacatcatacctgctagttccagcacaaaaaatggatgataattg |
349 |
Q |
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| T |
48057003 |
atggagttcatttcttgagacaggtagattctcataatcacctgcatcaacaacgtaacttagagttccggcaaaaaaagtggatgataattg |
48057095 |
T |
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