View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18853_high_1 (Length: 629)

Name: NF18853_high_1
Description: NF18853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18853_high_1
NF18853_high_1
[»] chr3 (6 HSPs)
chr3 (297-586)||(55156222-55156511)
chr3 (297-586)||(54572955-54573244)
chr3 (155-262)||(55156546-55156653)
chr3 (155-262)||(54573279-54573386)
chr3 (7-74)||(55156734-55156801)
chr3 (7-70)||(54573459-54573522)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 297 - 586
Target Start/End: Complemental strand, 55156511 - 55156222
Alignment:
Q  297 ggttcatactccttcaatggagaaagcttcttcgtctctggactgcgcaaacgaattctacttgtgccccttgatgttcctgcctgcaatccatcgatcg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55156511 ggttcatactccttcaatggagaaagcttcttcgtctctggactgcgcaaacgaattctacttgtgccccttgatgttcctgcctgcaatccatcgatcg 55156412  T
Q  397 aatcatcccactacataaaataagcaataaaatcaaggcatctgaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaataaacta 496  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55156411 aatcatcccactacataaaataagcaataaaatcaaggcatcggaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaacaaacta 55156312  T
Q  497 gtatttttagagtaaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttc 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55156311 gtatttttagagtaaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttc 55156222  T

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Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 297 - 586
Target Start/End: Complemental strand, 54573244 - 54572955
Alignment:
Q  297 ggttcatactccttcaatggagaaagcttcttcgtctctggactgcgcaaacgaattctacttgtgccccttgatgttcctgcctgcaatccatcgatcg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  54573244 ggttcatactccttcaatggagaaagcttcttcgtctctggactgcgcaaacgaattctacttgtgccccttactgttcctgcctgcaatccatcgatcg 54573145  T
Q  397 aatcatcccactacataaaataagcaataaaatcaaggcatctgaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaataaacta 496  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  54573144 aatcatcccactacataaaataagcaataaaatcaaggcatcggaagaacaaaaaattacaagcatggttgttcatgagatattttgttgcaacaaacta 54573045  T
Q  497 gtatttttagagtaaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttc 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54573044 gtatttttagagtaaaaaggaatcaaccagaaatacaaaaaattacaaaacacatttacctcatgagtacgagcagaactatttgggttc 54572955  T

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Target: chr3; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 55156653 - 55156546
Alignment:
Q  155 attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55156653 attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat 55156554  T
Q  255 tgactcca 262  Q
    ||||||||    
T  55156553 tgactcca 55156546  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 54573386 - 54573279
Alignment:
Q  155 attgtatcaatgaaatacagaacaaaatataatagtaacttgattggttaaaacaagtacatacagtttaattccggtccttagattatcctcttcccat 254  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||    
T  54573386 attgtatcaatgaaatacacaacaaaatattatagtaacttgattggttaaaacaagtacatacacttcaattccggtctttagattatccacttcccat 54573287  T
Q  255 tgactcca 262  Q
    ||||||||    
T  54573286 tgactcca 54573279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 55156801 - 55156734
Alignment:
Q  7 gagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaagtat 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55156801 gagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaagtat 55156734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 54573522 - 54573459
Alignment:
Q  7 gagagatgaaacatattctcttatgcatagaaactaaaaataccagaatttcacacactatcaa 70  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  54573522 gagagatgaaacatattctcttatgcatagacactaaaaatatcagaatttcacacactatcaa 54573459  T

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