View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18853_high_2 (Length: 593)
Name: NF18853_high_2
Description: NF18853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18853_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 416
Target Start/End: Original strand, 44385990 - 44386379
Alignment:
| Q |
10 |
aatataatttaggacataagaacactctttaacaacctttaaatagtttttatagaaattgaactattaaatactcgttagcacgaacctttaatttatt |
109 |
Q |
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| T |
44385990 |
aatataatttaggaaataagaatactctttaacaacctttaaatagtttttatagaaattgaactattaaatactagttagcacgaacatttaatttatt |
44386089 |
T |
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| Q |
110 |
tccatcaaaaggagaaatggtcacaccttctaccagactcatcnnnnnnnn--ccttgcttattctcaatttcaattaactttcattttcaatccctaac |
207 |
Q |
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| T |
44386090 |
tccatcacaaggagaaatagtcacaccttctaacacactcatcttatttttttccttgcttattctcaatttcaattaactttcattttcaatccctaac |
44386189 |
T |
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| Q |
208 |
aaccactctcttctcaattggtgaaattgaaacatgaaaaaagagggaagttagtgaatctggtgatgttgagtgccggtgagaatgatgagtgccggtg |
307 |
Q |
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| T |
44386190 |
aaccaccctcttctcaattggtgaaattgaaacatgaaaaaagagagaagttagtggatctggtgatg-------------------atgagtgccggtg |
44386270 |
T |
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| Q |
308 |
agaatgatgaggtttcaggtttcaacctaacgaagaagtgtttcatctttaaagttgcaacatcaccatattggcaccatgtcaccgacgattaaaactc |
407 |
Q |
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| T |
44386271 |
agaatgatgaggtttcaggtttcaacctaacgaagaagtgtttcatctttaaagttgcaacatcaccatattggcaccatgtcaccgacgattaaaactc |
44386370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 495 - 574
Target Start/End: Original strand, 44386467 - 44386546
Alignment:
| Q |
495 |
tcacaacagttggtcaaattttgtacagttgcaagcaaacagcgagtgaaagggttgtgattatatactagtatgcataa |
574 |
Q |
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| T |
44386467 |
tcacaacagctagtcaaattttgtacagttgcaagcaaacagcgagtgaaagggctgtgattatatactagtatgcataa |
44386546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 32932040 - 32932091
Alignment:
| Q |
224 |
attggtgaaattgaaacatgaaa-aaagagggaagttagtgaatctggtgat |
274 |
Q |
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| T |
32932040 |
attggtgaaattgaaacatgaaagaaagagggatggtggtgaatctggtgat |
32932091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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