View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18853_high_3 (Length: 386)
Name: NF18853_high_3
Description: NF18853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18853_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 157 - 368
Target Start/End: Original strand, 6739450 - 6739662
Alignment:
| Q |
157 |
taccaataatgaagactgatttcggccaacaaaactgtatcgga-gatggaggtttgatggtttctcatagcttagtttcttagagatattgattgagtt |
255 |
Q |
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| T |
6739450 |
taccaataatgaagactgatttcggccaacaaaactgtatcgggcgatggaggtttgatggtttctcatagcttagtttcttagagatattgattgagtt |
6739549 |
T |
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| Q |
256 |
atgttgtggctaattagacaatgttgaataacatgtgtatctaattgtttgtgcttgtaaaatgatattaacgtgtcctggttagattgcatcataattg |
355 |
Q |
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| T |
6739550 |
atgttgtggctaattagacaacgttgaacaacatgtgtatctaattgtttgtgcttgtaaaatgatattaacgtgtcctggttagattgcatcataattg |
6739649 |
T |
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| Q |
356 |
gattggctcgatt |
368 |
Q |
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| T |
6739650 |
gattggctcgatt |
6739662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 6739233 - 6739379
Alignment:
| Q |
10 |
catcatcatattcattttgaaattaatgtatagaattaaatgtcagtttcgtcctcgtcgatagtataatgaaactcgatcgcctctcaagtaatatatg |
109 |
Q |
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| T |
6739233 |
catcatcatattcattttgaaattaatgtaccgaataaaatgtcagtttcgtcctcgtcgatagtataatgaaactcgatcgcctctcaagta--atatg |
6739330 |
T |
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| Q |
110 |
atatatgatcagtgtcatactgctttcgaatgtgtgttcgagtatatta |
158 |
Q |
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| T |
6739331 |
atatatgatcagtgtcatactgctttcgaacgtgcgttcgagtatatta |
6739379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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