View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18853_high_5 (Length: 239)
Name: NF18853_high_5
Description: NF18853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18853_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 33117949 - 33118096
Alignment:
| Q |
59 |
aattctttgttatcaagttcaatattcattttagttgttatgtagctcacattaaagtgactaaaatcaaaatgtttgacatattacatagatgatttc- |
157 |
Q |
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| T |
33117949 |
aattctttgtcatcaagttcaatattcattttagttgctatgtagctcacattaaagtgactaaaatcaatatgtttgacgtatcacagagatgatttca |
33118048 |
T |
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| Q |
158 |
aacatcaatttttattcatgaactaaaatcaaacgacaaagaccaaaa |
205 |
Q |
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| T |
33118049 |
aacataaatttttattcatgaacaaaaatcaaacaataaagaccaaaa |
33118096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 33117887 - 33117931
Alignment:
| Q |
16 |
atgtgcttgttctgctcggtctgcattataggaagaatcacataa |
60 |
Q |
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| T |
33117887 |
atgtgcttgttctgctcggtctgcattataggaagaatcacataa |
33117931 |
T |
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