View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18853_high_6 (Length: 213)
Name: NF18853_high_6
Description: NF18853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18853_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 4163653 - 4163720
Alignment:
| Q |
127 |
tcacacaatcaacttggcagaatggaccagatgaatgtgagctaaattctttggcagcatgtgccctc |
194 |
Q |
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| T |
4163653 |
tcacacaatcaacttggcagaatggaccagatgaatgtgagctaaattctttggcagcatgtgccctc |
4163720 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 4163534 - 4163589
Alignment:
| Q |
9 |
agtagcataggccaattctcatgtcaatcaaaccaacaatgccatttcatgccagg |
64 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4163534 |
agtaccatgggccaattctcatgtcaatcaaaccaacaatgccatttcatgtcagg |
4163589 |
T |
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