View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18853_low_4 (Length: 356)
Name: NF18853_low_4
Description: NF18853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18853_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 1899702 - 1900042
Alignment:
| Q |
1 |
aaaataatgaagggtggtggctcaacaaacgatcaaaatgaaaactcgtatcatgacatgaactcgtgtgccctcaacttacaattttgttacacaaatg |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||| ||||| |
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| T |
1899702 |
aaaataatgaggggtggtggctcaacaaacgatcaaaatgaaaactcgtatcatgcaatgaacttgtgtgccctcaatttgcaattttgttacagaaatg |
1899801 |
T |
|
| Q |
101 |
taaaaactaaaacatttccttttttctttggaggtgggggcaaggcaatatggtcatttcccacgaacnnnnnnnactccctatactcttcaaatccaag |
200 |
Q |
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| T |
1899802 |
ttaaaactaacacatttccttttttctttggaggtgggggcatggtaatatggtcatttcccacgaactttttctactccctatactcttcaaatccaaa |
1899901 |
T |
|
| Q |
201 |
caatactaagctttaataaccaatgcctaagcagcaaagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
1899902 |
caatactaagctttaataaccaatgcctaagcagcaaagagaagaagacaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaaca |
1900001 |
T |
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| Q |
301 |
agacatctagaaccgagcacaaggcaacattcacatgaaag |
341 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
1900002 |
agacatctagaaacgagcacaaggcaacattcacatgaaag |
1900042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 1909148 - 1909488
Alignment:
| Q |
1 |
aaaataatgaagggtggtggctcaacaaacgatcaaaatgaaaactcgtatcatgacatgaactcgtgtgccctcaacttacaattttgttacacaaatg |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||||||| ||||| |
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| T |
1909148 |
aaaataatgaggggtggtggctcaacaaacgatcaaaatgaaaactcgtatcatgcaatgaacttgtgtgccctcaatttgcaattttgttacagaaatg |
1909247 |
T |
|
| Q |
101 |
taaaaactaaaacatttccttttttctttggaggtgggggcaaggcaatatggtcatttcccacgaacnnnnnnnactccctatactcttcaaatccaag |
200 |
Q |
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| T |
1909248 |
ttaaaactaacacatttccttttttctttggaggtgggggcatggtaatatggtcatttcccacgaactttttctactccctatactcttcaaatccaaa |
1909347 |
T |
|
| Q |
201 |
caatactaagctttaataaccaatgcctaagcagcaaagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
1909348 |
caatactaagctttaataaccaatgcctaagcagcaaagagaagaagacaaaaatctgtgcctatagagttggaaaagtgcgtcgaagctgtccaaaaca |
1909447 |
T |
|
| Q |
301 |
agacatctagaaccgagcacaaggcaacattcacatgaaag |
341 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||| |
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| T |
1909448 |
agacatctagaaacgagcacaaggcaacattcacatgaaag |
1909488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 334
Target Start/End: Original strand, 1892789 - 1893118
Alignment:
| Q |
4 |
ataatgaagggtggtggctcaacaaacgatcaaaatgaaaactcgtatcatgacatgaactcgtgtgccctcaacttacaattttgttacacaaatgtaa |
103 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| |
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| T |
1892789 |
ataatgaagggtggtggctcaacaaacaatcaaaatgaaaactcgtatcatgccatgaacttgtgtgccctcaacttgcaattttgttacacagatgtaa |
1892888 |
T |
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| Q |
104 |
aaactaaaacatttccttttttctttggaggtgggggcaaggcaatatggtcatttcccacgaacnnnnnnnactccctatactcttcaaatccaagcaa |
203 |
Q |
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|||| || |||||||||||||||||||| ||||||| || || ||||||||||||||||| |||| ||||||||||||||||||| |||| ||| |
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| T |
1892889 |
aaaccaacacatttccttttttctttgggggtggggccatggtaatatggtcatttcccaagaactttttt-actccctatactcttcaaacccaaacaa |
1892987 |
T |
|
| Q |
204 |
tactaagctttaataaccaatgcctaagcagcaaagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaaga |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1892988 |
tactaagctttaataaccaatgcctaagcagcaaagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaaacaaga |
1893087 |
T |
|
| Q |
304 |
catctagaaccgagcacaaggcaacattcac |
334 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
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| T |
1893088 |
catctagaaacgagcacaaggcaacattcac |
1893118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 138 - 341
Target Start/End: Complemental strand, 2930421 - 2930217
Alignment:
| Q |
138 |
gggcaaggcaatatggtcatttcccacgaacnnnnnnnactccctatactcttcaaatccaagcaatactaagctttaataaccaatgcctaagcagcaa |
237 |
Q |
| |
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||||| || |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2930421 |
gggcatggtaatatggtcatttctcacgaaccttttttactccctatactcttcaaatccaagcaatactaagctttaataaccaatgcctaagcaacaa |
2930322 |
T |
|
| Q |
238 |
agagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaaccgagc-acaaggcaacattcacat |
336 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
2930321 |
agagaagaagacaaaaatctgtgcctacagagttggaaacgtgcgtcgaagctgtccaaagcaagacatctagaaacgagcaacaaggcaacattcacat |
2930222 |
T |
|
| Q |
337 |
gaaag |
341 |
Q |
| |
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||||| |
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| T |
2930221 |
gaaag |
2930217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 2935782 - 2935569
Alignment:
| Q |
4 |
ataatgaagggtggtggctcaacaaacgatcaaaatgaaaactcgtatcatgacatgaactcgtgtgccctcaacttacaattttgttacacaaatgtaa |
103 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2935782 |
ataatgaagggtggtggctcaacaatcaatcaaaatgaaaacttgtatcatgccatgaactcgtgtgccctcaacttgcaattttgttacacaaatgtaa |
2935683 |
T |
|
| Q |
104 |
aaactaaaacatttccttttttctttggaggtgggggcaaggcaatatggtcatttcccacgaacnnnnnnnactccctatactcttcaaatccaagcaa |
203 |
Q |
| |
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|||| || |||||||||||||||||||| ||||||| | | |||||||||||||||||||||| ||||||||||||||| ||| |||| ||| |
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| T |
2935682 |
aaaccaacacatttccttttttctttgggggtggggtc---gtaatatggtcatttcccacgaac-ttttttactccctatactctttaaacccaaacaa |
2935587 |
T |
|
| Q |
204 |
tactaagctttaataacc |
221 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
2935586 |
tactaagctttaataacc |
2935569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 213 - 341
Target Start/End: Complemental strand, 2935398 - 2935269
Alignment:
| Q |
213 |
ttaataaccaatgcctaagcagcaaagagaagaagacaaaaatctgtgcctacagagttggaaaagtgcgtcgaagctgtccaaagcaagacatctagaa |
312 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
2935398 |
ttaataaccaatgcctaagcatcaaagagaagaagacaaaaatttgtgcctacagagtgggaaaagtgcatcgaagctgtccaaagcaagacatctagaa |
2935299 |
T |
|
| Q |
313 |
ccgagc-acaaggcaacattcacatgaaag |
341 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |
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|
| T |
2935298 |
acgagcaacaaggcgacattcacatgaaag |
2935269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2930528 - 2930469
Alignment:
| Q |
1 |
aaaataatgaagggtggtggctcaacaaacgatcaaaatgaaaactcgtatcatgacatg |
60 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
2930528 |
aaaataatgaagggtggtggctcgacaaacgatcaaaatgaaaactcgtatcatgccatg |
2930469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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