View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18854_high_2 (Length: 634)
Name: NF18854_high_2
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18854_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 110 - 616
Target Start/End: Complemental strand, 26496904 - 26496387
Alignment:
| Q |
110 |
ccctttataaacccatcatttaaagtcacctcgaaaattgtgctagatttaacagcgattggagacacgtgtcaacaagcgcaaggattcgaacacgtca |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26496904 |
ccctttataaacccatcatttaaagtcgcctcgaaaatcatgctggatttaacagcgattggagacatgtgtcaacaagcgcaaggattcgaacacgtca |
26496805 |
T |
|
| Q |
210 |
ctaccaacgaaaggtcatgaaatctaagtcgtctgatcatataccaaacgactcaccctagcaatcttcaaaataacccaactcgttcagacgccctcac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
26496804 |
ctaccaacgaaaggtcatgaaatctaagtcgtttgatcatataccaaacgactcaccctagcaatcttcaaaataagccaactcgttcatacgccctcac |
26496705 |
T |
|
| Q |
310 |
cacttcatcttgtctaagactcgtgcttgggagattgtagaccatctacattcctaaaggcacaggtgccctcaagaaaggctcgctaaagctcggacgt |
409 |
Q |
| |
|
|||||| ||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26496704 |
cacttcgtcttgcctaagactcgtgtttgggagattgtggaccatctacattcctaaaggcacaggtgccctcaagaaaggctcgctaaagctcggacgt |
26496605 |
T |
|
| Q |
410 |
gtccc-----------tcgcttcatagcaagcatctgtaagtacaataaactcatatgattaatcaacctcatagatttatcaaatttatagccaccagt |
498 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26496604 |
gtccctccaagagatatcgcttcatagcaagcatctgtaagcacaataaactcatacgagtaatcaacctcatagatttatcaaatttatagccaccagt |
26496505 |
T |
|
| Q |
499 |
tattagttaaataaatttcgatgacatgataatgtgattgtatcatagtgcaatggttgaacnnnnnnngcgtgacatgatgagacaaaatctaaacaaa |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26496504 |
tattagttaaataaatttcgatgacatgataatgtgattgtatcatagtgcaatggttgaacaaaaaaagcgtgacatgatgagacaaaatctaaacaaa |
26496405 |
T |
|
| Q |
599 |
attgatagtaggcgattc |
616 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26496404 |
attgatagtaggcgattc |
26496387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 26496999 - 26496957
Alignment:
| Q |
15 |
aaccgaagagagctcgcgtagttgaaggagaaagtccagaagc |
57 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26496999 |
aaccgaagagagctcgcgtcgttgaaggagaaagtccggaagc |
26496957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 17755636 - 17755694
Alignment:
| Q |
425 |
gcaagcatctgtaagtacaataaactcatatgattaatc--aacctcatagatttatca |
481 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
17755636 |
gcaagcatctgacagtacaataaacttatatgagtaatcaaaacctcatagatttatca |
17755694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 17764623 - 17764681
Alignment:
| Q |
425 |
gcaagcatctgtaagtacaataaactcatatgattaatc--aacctcatagatttatca |
481 |
Q |
| |
|
||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
17764623 |
gcaagcatctgacagtacaataaacttatatgagtaatcaaaacctcatagatttatca |
17764681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 49022409 - 49022472
Alignment:
| Q |
352 |
catctacattcctaaaggcacaggtgccctcaagaaaggctcgctaaagctcggacgtgtccctc |
416 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| |||||||| | |||| |||||||||||||| |
|
|
| T |
49022409 |
catctacattcctaaaaacacaggtgccttcaa-aaaggctccttgaagcccggacgtgtccctc |
49022472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University