View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18854_high_5 (Length: 250)
Name: NF18854_high_5
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18854_high_5 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 33081141 - 33080906
Alignment:
| Q |
13 |
aatattgatgtggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081141 |
aatattgatgtggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaatt |
33081042 |
T |
|
| Q |
113 |
atcannnnnnnnnctcacacaaaagatgttgttccctctatatcctccacttgaattgttaatgttaatttagctttcaattaatcagttattttgtaaa |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081041 |
atcattttattttctcacacaaaagatgttgttccctctatatcctccacttg--ttgttaatgttaatttagctttcaattaatcagttattttgtaaa |
33080944 |
T |
|
| Q |
213 |
aacaaaataaattacctaaagtagtttgaatttagttt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33080943 |
aacaaaataaattacctaaagtagtttgaatttagttt |
33080906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 33084991 - 33084862
Alignment:
| Q |
127 |
tcacacaaaagatgttgttccctctatatcctccacttg-----aattgttaatgttaatt----tagctttcaattaatca----gttattttgtaaaa |
213 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| || |||||||||||||| ||||| ||||||||| | |||||||| |||| |
|
|
| T |
33084991 |
tcacacaaaagatgttgtttcctccctatcctccacttgttgttaaatgttaatgttaattaatttagctatcaattaattaattagttatttttcaaaa |
33084892 |
T |
|
| Q |
214 |
acaaaataaattacctaaagtagtttgaat |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33084891 |
acaaaataaattacctaaagtagtttgaat |
33084862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University