View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18854_high_9 (Length: 219)
Name: NF18854_high_9
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18854_high_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4744911 - 4744693
Alignment:
| Q |
1 |
ttttgccaaaactactcaaaatttgacctaatctttctataataacctagagtacactagtttttgctgtgtttcctaaggataaagtacttgtagtacc |
100 |
Q |
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| T |
4744911 |
ttttgccaaaactactcaaaatttgacctaatctttctataataacctagagtacactagtttttgctatgtttcctaaggataaagtacttgtagtacc |
4744812 |
T |
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| Q |
101 |
gtcagtctcagccagccgccattgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccaccaactc |
200 |
Q |
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| T |
4744811 |
gtcagtctcagccagccgccattgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccactaactc |
4744712 |
T |
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| Q |
201 |
tcctccgttacttccattc |
219 |
Q |
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||||||||||||||||||| |
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| T |
4744711 |
tcctccgttacttccattc |
4744693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4184075 - 4183854
Alignment:
| Q |
1 |
ttttgccaaaactactcaaaatttgacctaatctttctataataa---cctagagtacactagtttttgctgtgtttcctaaggataaagtacttgtagt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4184075 |
ttttgccaaaactactcaaaatttgacctaatctttctataataataacctagagtacactagtttttgctatgtttcctaaggataaagtacttgtagt |
4183976 |
T |
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| Q |
98 |
accgtcagtctcagccagccgccattgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccaccaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
4183975 |
accgtcagtctcagccagccgccattgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacacaactgcctcccactaa |
4183876 |
T |
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| Q |
198 |
ctctcctccgttacttccattc |
219 |
Q |
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| T |
4183875 |
ctctcctccgttacttccattc |
4183854 |
T |
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