View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18854_low_1 (Length: 877)
Name: NF18854_low_1
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18854_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 826; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 826; E-Value: 0
Query Start/End: Original strand, 19 - 868
Target Start/End: Complemental strand, 27670015 - 27669166
Alignment:
| Q |
19 |
agtcggaacatttggttatcttgctcctgaatacttcatgtatggaaaagttagtgacaagatagatgtctatgccttcggtgtagtgctacttgaacta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27670015 |
agtcggaacatttggttatcttgctcctgaatacttcatgtatggaaaagttagtgacaagatagatgtctatgccttcggtgtagtgctacttgaacta |
27669916 |
T |
|
| Q |
119 |
atatcaggtagggaaccgatcagctctgaaccttgcaaaggacaagagagcttggtagcttgggtaagacctaacttcagttagaataaatttttattga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27669915 |
atatcaggtagggaaccgatcagctctgaaccttgcaaaggacaagagagcttggtagcttgggtaagacctaacttcagttagaataaatttttattga |
27669816 |
T |
|
| Q |
219 |
accgataaaaactccgagtcacgattcaattgtttaaaattgttcgaactgatacgaaattgtgatttcaactatcgagtttgatttttgagatattgat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27669815 |
accgataaaaactccgagtcacgattcaattgtttaaaattgttcgaactgatacgaaattgtgatttcaactatcgagtttgatttttgaaatattgaa |
27669716 |
T |
|
| Q |
319 |
aaatatgcttttattgtataatatgtaaaatttgaatgatgaaaaatgatttcattttcaggcaaaaccaataatagagagtggagatattaaaggtttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27669715 |
aaatatgcttttattgtataatatgtaaaatttgaatgatgaaaaatgatttcattttcaggcaaaaccaataatagagagtggagatattaaaggtttg |
27669616 |
T |
|
| Q |
419 |
ttggacccaaaattagaagggaagtttgatgagacccaaatgaaaagaatggttttggcagcatctttatgcatcgcacgggctgctagacttcgtccta |
518 |
Q |
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| T |
27669615 |
ttggacccaaaattagaagggaagtttgatgagacccaaatgaaaagaatggttttggcagcatctttatgcatcgcacgggctgctagacttcgtccta |
27669516 |
T |
|
| Q |
519 |
aatttaatcaggtaataacattttttacacatgcatccaataatttaatcggagtaatggatatgtaaaacttgtttatgtatataccaattaaatctag |
618 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27669515 |
aatttaatcaggtaataacattttttacacatgtatccaataatttaatcgcagtaatggatatgtaaaacttgtttatgtaaataccaattaaatctag |
27669416 |
T |
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| Q |
619 |
taataaatgacagtgaagttgtcaaattctcaatatgaagtcacattagcaattatatattttgaaaactttcagctcttaaaagtttatcattcctatg |
718 |
Q |
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| T |
27669415 |
taataaatgacagtgaagttgtcaaattctcaatatgaagtcacattagcaattatatattttgaaaactttcagctcttaaaagtttatcattcctatg |
27669316 |
T |
|
| Q |
719 |
tacagatactgaagatcctaaaagggaacaatgaagatgaatattgcttcaatgagtattcagagaatgaagaaaacattgatgatgaagtgtatccaaa |
818 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27669315 |
tacagatactgaagatcctaaaagggaacaatgaagatgaatattgcttcaatgagtattcagagaatgaagaaaacatcgatgatgaagtgtatccaaa |
27669216 |
T |
|
| Q |
819 |
ttcaagtacagagttacacctaactcttgcattacttggtgttgatgatg |
868 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27669215 |
ttcaagtacagagttacacctaactcttgcattacttggtgttgatgatg |
27669166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 55177746 - 55177634
Alignment:
| Q |
23 |
ggaacatttggttatcttgctcctgaatacttcatgtatggaaaagttagtgacaagatagatgtctatgccttcggtgtagtgctacttgaactaatat |
122 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||| |
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| T |
55177746 |
ggaacttttggttatcttgcacctgaatacttcatgtatggaaaggttagtgacaagatagatgtttatgcctttggtgtggtgctacttgaacttatat |
55177647 |
T |
|
| Q |
123 |
caggtagggaacc |
135 |
Q |
| |
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|||| |||||||| |
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| T |
55177646 |
caggaagggaacc |
55177634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 797 - 856
Target Start/End: Complemental strand, 55177263 - 55177204
Alignment:
| Q |
797 |
ttgatgatgaagtgtatccaaattcaagtacagagttacacctaactcttgcattacttg |
856 |
Q |
| |
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||||||||||||| ||||||||||||||| |||| || ||||| | ||||||||||||| |
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| T |
55177263 |
ttgatgatgaagtctatccaaattcaagtgcagaattgcaccttagccttgcattacttg |
55177204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 40378512 - 40378585
Alignment:
| Q |
41 |
gctcctgaatacttcatgtatggaaaagttagtgacaagatagatgtctatgccttcggtgtagtgctacttga |
114 |
Q |
| |
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|||||||||||||||||||| || ||||| | ||| ||||| || |||||||| || ||||| ||||| ||||| |
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| T |
40378512 |
gctcctgaatacttcatgtacggcaaagtaaatgataagatcgacgtctatgcatttggtgttgtgcttcttga |
40378585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 536
Target Start/End: Complemental strand, 55177585 - 55177428
Alignment:
| Q |
379 |
ggcaaaaccaataatagagagtggagatattaaaggtttgttggacccaaaattagaagggaagtttgatgagacccaaatgaaaagaatggttttggca |
478 |
Q |
| |
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|||||||||||| |||||||||| ||| ||||| | || ||||| ||||| || |||| || ||||||| | |||||| | ||||||||| | ||| |
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| T |
55177585 |
ggcaaaaccaattttagagagtggggatgttaaaagcttattggatccaaagttgcaaggaaaatttgatgtagcacaaatgcacagaatggttcttgca |
55177486 |
T |
|
| Q |
479 |
gcatctttatgcatcgcacgggctgctagacttcgtcctaaatttaatcaggtaataa |
536 |
Q |
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|||||| | ||||| |||| ||||| ||||||||||||| | |||||||| |||| |
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| T |
55177485 |
gcatctctgtgcattacacgagctgcgcgacttcgtcctaatatgaatcaggtgataa |
55177428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 10259977 - 10260047
Alignment:
| Q |
44 |
cctgaatacttcatgtatggaaaagttagtgacaagatagatgtctatgccttcggtgtagtgctacttga |
114 |
Q |
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|||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| || ||||| ||||| ||||| |
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| T |
10259977 |
cctgaatatttcatgtatggtaaagtaaatgataagattgatgtctatgcatttggtgtggtgcttcttga |
10260047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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