View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18854_low_3 (Length: 384)
Name: NF18854_low_3
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18854_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 38411209 - 38411471
Alignment:
| Q |
19 |
gtgttgtcgcgccctcgtatccccatcagcttttgtcattcaaattaagggaaatgaccaatctataagtaacggaagaaaagttaagggcttctcatca |
118 |
Q |
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| T |
38411209 |
gtgttgtcgtgccctcgtatccccatcagcttttgtcattcaaattaagggaaatgaccaatctataagtaacggaagaaaagttaagggcttctcatca |
38411308 |
T |
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| Q |
119 |
tgcttttctatattataggaggatatcaatgttttggtaaagcaattgaatatcaaacaaatttcaatgaaaatgaattgctgtactcctattatatatc |
218 |
Q |
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| T |
38411309 |
tgcttttctatattatagggggatatcaatgttttggtaaagcaattgaatatcaaacaaatttcaatgaaaatgaattgctgtactcctgttatatatc |
38411408 |
T |
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| Q |
219 |
ttgttagtattgaacatgaaattgataaggatgaaccatttttgaatatatagcttgataagg |
281 |
Q |
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| T |
38411409 |
ttgttagtattgaacatgaaattgataaggatgaaccatttttgaatatatagcttgataagg |
38411471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 53509454 - 53509394
Alignment:
| Q |
308 |
cgctaaagtcgccagagtagaccacaaataatacaaagagaaactcaatgactttccaact |
368 |
Q |
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| T |
53509454 |
cgctaaagtcgccagagtagaccacaaataatacaaagagaaactcaatgactttccaact |
53509394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 35274701 - 35274646
Alignment:
| Q |
93 |
gaagaaaagttaagggcttctcatcatgcttttctatattataggaggatatcaatg |
149 |
Q |
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| T |
35274701 |
gaagaaaa-ttaagggcttctcatcatgcttttctatattataggaggatatcaatg |
35274646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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