View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18854_low_6 (Length: 250)

Name: NF18854_low_6
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18854_low_6
NF18854_low_6
[»] chr7 (5 HSPs)
chr7 (8-236)||(49045246-49045474)
chr7 (114-219)||(5543024-5543129)
chr7 (121-206)||(41084789-41084874)
chr7 (114-205)||(27236835-27236926)
chr7 (121-206)||(1566965-1567050)
[»] chr1 (10 HSPs)
chr1 (116-220)||(40289071-40289175)
chr1 (116-234)||(12381163-12381279)
chr1 (116-234)||(12385230-12385346)
chr1 (116-198)||(15444956-15445038)
chr1 (116-210)||(27935047-27935141)
chr1 (124-212)||(10832239-10832327)
chr1 (116-210)||(21268320-21268413)
chr1 (151-205)||(36596572-36596626)
chr1 (154-214)||(23328405-23328465)
chr1 (116-176)||(23328495-23328555)
[»] chr2 (7 HSPs)
chr2 (116-220)||(5671506-5671610)
chr2 (116-220)||(34512623-34512727)
chr2 (116-235)||(29260156-29260274)
chr2 (116-198)||(747519-747601)
chr2 (116-210)||(1729472-1729565)
chr2 (116-219)||(14120851-14120953)
chr2 (151-196)||(19851673-19851718)
[»] chr8 (10 HSPs)
chr8 (116-219)||(8810477-8810580)
chr8 (116-220)||(39972180-39972284)
chr8 (116-206)||(13520609-13520699)
chr8 (116-206)||(13610144-13610234)
chr8 (116-210)||(5074818-5074912)
chr8 (116-206)||(5217009-5217099)
chr8 (131-219)||(43285180-43285271)
chr8 (116-188)||(7475826-7475898)
chr8 (116-220)||(35236998-35237102)
chr8 (116-197)||(36766674-36766756)
[»] chr3 (8 HSPs)
chr3 (116-202)||(43451517-43451603)
chr3 (128-210)||(17073105-17073187)
chr3 (116-220)||(50673058-50673161)
chr3 (116-219)||(12060087-12060190)
chr3 (131-214)||(29213403-29213486)
chr3 (116-220)||(4298314-4298419)
chr3 (157-206)||(46298751-46298800)
chr3 (116-176)||(20256116-20256176)
[»] chr4 (7 HSPs)
chr4 (116-210)||(39418146-39418240)
chr4 (124-210)||(49483084-49483170)
chr4 (116-208)||(10567307-10567399)
chr4 (116-185)||(2940267-2940336)
chr4 (131-194)||(3769816-3769879)
chr4 (155-205)||(21760562-21760612)
chr4 (116-194)||(35675218-35675296)
[»] chr6 (5 HSPs)
chr6 (119-210)||(32251340-32251430)
chr6 (116-198)||(28014634-28014716)
chr6 (116-220)||(26539089-26539194)
chr6 (116-220)||(31490713-31490822)
chr6 (114-205)||(21479849-21479940)
[»] chr5 (6 HSPs)
chr5 (116-188)||(24288496-24288568)
chr5 (116-188)||(24373653-24373725)
chr5 (116-181)||(12349572-12349637)
chr5 (165-234)||(12349659-12349728)
chr5 (151-193)||(28599717-28599759)
chr5 (20-80)||(20423383-20423443)
[»] scaffold0039 (1 HSPs)
scaffold0039 (20-80)||(52924-52984)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 49045474 - 49045246
Alignment:
Q  8 cgaagaatatgtgactggtaggaccaccatgtgaggtggcgccgttcaaacccttgtcgggttattgttcatcggaatgggttacgcctcttctctctca 107  Q
    ||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49045474 cgaagaataggtgactagaaggaccaccgtgtgaggtggcgccgttcaaacccttgtcgggttattgttcatcggaatgggttacgcctcttctctctca 49045375  T
Q  108 ttgttaataaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttg 207  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49045374 ttgttaataaatgttgtattaggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttg 49045275  T
Q  208 ttttcttcactagcaccctaagggcactt 236  Q
    ||||||||||||||||||||| |||||||    
T  49045274 ttttcttcactagcaccctaaaggcactt 49045246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 5543129 - 5543024
Alignment:
Q  114 ataaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttct 213  Q
    |||||| |||||||| |||||||||||||||  ||  |||||||||| ||||||||||||||| || ||||||| |||||||| | |||||| |||||||    
T  5543129 ataaatattgtattgagaaatggtgaaaagtgatatatttgactttttaaaagttaaaaaattgttgaattcaacgcaaacttgctatttttagttttct 5543030  T
Q  214 tcacta 219  Q
    | ||||    
T  5543029 taacta 5543024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 41084874 - 41084789
Alignment:
Q  121 ttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccatttttt 206  Q
    |||||||| |||||  |||||| |  ||| ||| |||||| |||||||||||||||||| || ||||| |||||||| ||||||||    
T  41084874 ttgtattgagaaataatgaaaattgatagatttaactttttaaaagttaaaaaattattgaactcaatacaaacttatcatttttt 41084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 27236835 - 27236926
Alignment:
Q  114 ataaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttt 205  Q
    |||||| ||||| ||| ||||| |||||| |  ||| |||||||| | ||||||||||||||| || |||||||| |||| |||| ||||||    
T  27236835 ataaatattgtaatggaaaatgatgaaaaatgatagatttgacttcttaaaagttaaaaaattgttgaattcaatacaaatttactattttt 27236926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 1566965 - 1567050
Alignment:
Q  121 ttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccatttttt 206  Q
    |||||||| |||| ||||||||||  ||  ||||| |||||||||  ||||||||| || ||||  ||| ||||||||||||||||    
T  1566965 ttgtattgagaaacggtgaaaagtgataaatttgatttttgaaaaactaaaaaattgttgaattttatgtaaacttaccatttttt 1567050  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 40289175 - 40289071
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    ||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||     
T  40289175 aaatgttgtattgggaaatagtgaaaagtgatagatttgacttttgaaaagttaaataattattgaattcaatgcaaacttaccattttttattttctta 40289076  T
Q  216 actag 220  Q
    |||||    
T  40289075 actag 40289071  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 12381279 - 12381163
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    ||||||| ||||| ||||| |||||| ||  ||| |||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||| |||     
T  12381279 aaatgttctattgagaaatagtgaaatgtgatagatttgacttttgaaaagttaaaaaattgttgaattcaat--aaacttaccattttttgtttactta 12381182  T
Q  216 actagcaccctaagggcac 234  Q
    |||||   |||||||||||    
T  12381181 actagtgtcctaagggcac 12381163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 12385346 - 12385230
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    ||||||| ||||| ||||| |||||| ||  ||| |||||||||||||||||||||||||| || ||||||||  |||||||||||||||||||| |||     
T  12385346 aaatgttctattgagaaatagtgaaatgtgatagatttgacttttgaaaagttaaaaaattgttgaattcaat--aaacttaccattttttgtttactta 12385249  T
Q  216 actagcaccctaagggcac 234  Q
    |||||   |||||||||||    
T  12385248 actagtgtcctaagggcac 12385230  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 15444956 - 15445038
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttac 198  Q
    |||| |||||||| |||||||||||||||| ||   |||| |||| |||||||||||||||||| ||||||||||||||||||    
T  15444956 aaatattgtattgagaaatggtgaaaagtaataaagttgattttttaaaagttaaaaaattattgaattcaatgcaaacttac 15445038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 27935047 - 27935141
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    |||| ||||||||| |||||||||||| || | | ||||| |||| ||||||| ||||||| || |||||||| ||||||||| |||||||||||    
T  27935047 aaattttgtattggaaaatggtgaaaaataatggatttgattttttaaaagttcaaaaattgttgaattcaatacaaacttactattttttgttt 27935141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 10832239 - 10832327
Alignment:
Q  124 tattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttc 212  Q
    |||||| |||||||||||| |  ||| ||||| |||| ||||||||||||||| || |||||||| ||||||||| |||||||| ||||    
T  10832239 tattggaaaatggtgaaaattgctagatttgattttttaaaagttaaaaaattgttgaattcaattcaaacttactattttttggtttc 10832327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 21268320 - 21268413
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    ||||||||||||| ||||||||||||| |  ||| ||| |||||| ||||||||||||||| || |||||||| |||| |||| |||||| ||||    
T  21268320 aaatgttgtattgagaaatggtgaaaaatgatagatttaactttt-aaaagttaaaaaattgttgaattcaatacaaatttactatttttagttt 21268413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 36596626 - 36596572
Alignment:
Q  151 tttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttt 205  Q
    ||||| |||| ||||||||||||||| || |||||||||||||||||| ||||||    
T  36596626 tttgaatttttaaaagttaaaaaattgttgaattcaatgcaaacttactattttt 36596572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 23328465 - 23328405
Alignment:
Q  154 gacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttctt 214  Q
    ||||||| ||||||||||||||| || ||||||||||||| |||  |||| | ||||||||    
T  23328465 gactttttaaaagttaaaaaattgttgaattcaatgcaaatttattatttctagttttctt 23328405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 23328555 - 23328495
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaatt 176  Q
    |||| |||||||| |||||||| |||| |  ||| |||||||||| |||||||||||||||    
T  23328555 aaattttgtattgagaaatggtaaaaaattatagatttgactttttaaaagttaaaaaatt 23328495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 5671610 - 5671506
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    ||||||| ||||| |||||||||||||||  ||| |||||||||| ||||||||||||||| || |||| ||||||||||||||||||||| ||| |||     
T  5671610 aaatgttttattgagaaatggtgaaaagtgatagatttgacttttaaaaagttaaaaaattcttgaattgaatgcaaacttaccattttttatttcctta 5671511  T
Q  216 actag 220  Q
    |||||    
T  5671510 actag 5671506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 34512727 - 34512623
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    |||||||||||| | ||||||||||||||  ||| |||||||||| ||||||||||||||| || |||||||| ||||||||| |||||| ||||||||     
T  34512727 aaatgttgtattagaaaatggtgaaaagtgatagatttgactttttaaaagttaaaaaattgttaaattcaatacaaacttactatttttagttttctta 34512628  T
Q  216 actag 220  Q
    |||||    
T  34512627 actag 34512623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 29260156 - 29260274
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    |||||||||| ||| ||||||||||||||  ||| |||||||||| ||||||||||||||| || |||||||||| |||||| ||||||| |||| |||     
T  29260156 aaatgttgtactggaaaatggtgaaaagtgatagatttgacttttaaaaagttaaaaaattgttgaattcaatgcgaacttatcatttttggtttcctta 29260255  T
Q  216 actagcaccctaagggcact 235  Q
    ||| | | ||||||||||||    
T  29260256 acttgta-cctaagggcact 29260274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 747519 - 747601
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttac 198  Q
    |||||||||||||| |||| |||||||||  ||| ||| |||||| ||||||||||||||| || |||||||||| |||||||    
T  747519 aaatgttgtattggaaaatagtgaaaagtgatagatttaactttttaaaagttaaaaaattgttgaattcaatgccaacttac 747601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 1729565 - 1729472
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    |||||||||||||  |||||||||||| |  ||| ||||||||| |||||||||||||||| || |||||||| ||| ||||  |||||| ||||    
T  1729565 aaatgttgtattgaaaaatggtgaaaaatgatagatttgacttt-gaaaagttaaaaaattgttgaattcaatacaagcttaatatttttagttt 1729472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 14120851 - 14120953
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    |||||||||||||  ||||||||||||||  ||| |||  ||||| || |||||||||||| || ||||||||  ||| ||||||||||| |||| |||     
T  14120851 aaatgttgtattga-aaatggtgaaaagtgatagatttagctttttaatagttaaaaaattgttaaattcaatataaatttaccatttttagtttcctta 14120949  T
Q  216 acta 219  Q
    ||||    
T  14120950 acta 14120953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 19851718 - 19851673
Alignment:
Q  151 tttgacttttgaaaagttaaaaaattatttaattcaatgcaaactt 196  Q
    |||||||||| ||||||||||||||| || |||||||| |||||||    
T  19851718 tttgactttttaaaagttaaaaaattgttgaattcaatacaaactt 19851673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 8810580 - 8810477
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||| |||| |||||||||||||  ||| |||||||||||| || ||||| |||||||     
T  8810580 aaatgttgtattgggaaatggtgaaaagtaatagatttaactttttaaaaattaaaaaattattgtatttaatgcaaacttatcaatttttattttctta 8810481  T
Q  216 acta 219  Q
    ||||    
T  8810480 acta 8810477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 39972180 - 39972284
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    |||||||||||||||||||||||||||||  |   |||||||||| ||||||||||||||| || |||||||||||||| ||| |||||| |||| |||     
T  39972180 aaatgttgtattgggaaatggtgaaaagtgatgaatttgactttttaaaagttaaaaaattgttcaattcaatgcaaacatactatttttggtttcctta 39972279  T
Q  216 actag 220  Q
    |||||    
T  39972280 actag 39972284  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 13520699 - 13520609
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccatttttt 206  Q
    |||||||||| | ||| ||||||||||||| ||| |||| |||||||||||||||||||||  | |||||||| |||||||||||||||||    
T  13520699 aaatgttgtagtaggatatggtgaaaagtaatagatttggcttttgaaaagttaaaaaattgctaaattcaatacaaacttaccatttttt 13520609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 13610234 - 13610144
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccatttttt 206  Q
    |||||||||| | ||| ||||||||||||| ||| |||| |||||||||||||||||||||  | |||||||| |||||||||||||||||    
T  13610234 aaatgttgtagtaggatatggtgaaaagtaatagatttggcttttgaaaagttaaaaaattgctaaattcaatacaaacttaccatttttt 13610144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 210
Target Start/End: Complemental strand, 5074912 - 5074818
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    |||||||||||||| ||||| |||||| |  |||  |||||||||  |||||||||||||| || |||||| ||||||||||| |||||| ||||    
T  5074912 aaatgttgtattggaaaatgttgaaaaattatagaattgacttttttaaagttaaaaaattgttgaattcagtgcaaacttactatttttagttt 5074818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 5217009 - 5217099
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccatttttt 206  Q
    |||||||||||||  |||  ||||||||   ||| | |||||||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  5217009 aaatgttgtattgaaaaactgtgaaaagcgatagatctgactttttaaaagttaaaaaattgttaaattcaacgcaaacttaccatttttt 5217099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 43285271 - 43285180
Alignment:
Q  131 aaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaat---tcaatgcaaacttaccattttttgttttcttcacta 219  Q
    ||||||||||||||  ||| ||||| |||||||||||||||||||| || |||   ||||||  ||||||||||||||||||| ||| ||||    
T  43285271 aaatggtgaaaagtgatagatttgatttttgaaaagttaaaaaattgttgaattcatcaatgttaacttaccattttttgtttccttaacta 43285180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 7475898 - 7475826
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaat 188  Q
    ||||||||||||| |||||||||||||    ||| ||||||||||||||| |||||||||| |||||| ||||    
T  7475898 aaatgttgtattgagaaatggtgaaaaacgatagatttgacttttgaaaacttaaaaaattgtttaatccaat 7475826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 35236998 - 35237102
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    |||||||||||||  || |||||||||||  ||  |||   |||| |||||||| |||||   | ||||||||||||||||| ||||||||||||||||     
T  35236998 aaatgttgtattgaaaagtggtgaaaagtgataaatttactttttaaaaagttataaaatcgctaaattcaatgcaaacttatcattttttgttttctta 35237097  T
Q  216 actag 220  Q
    |||||    
T  35237098 actag 35237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 36766674 - 36766756
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaa-gttaaaaaattatttaattcaatgcaaactta 197  Q
    |||||||||||||  ||||| | |||| |  ||| |||||| |||||||| |||||||||||||| |||| ||||||||||||    
T  36766674 aaatgttgtattgaaaaatgataaaaaatgatagatttgacgtttgaaaaagttaaaaaattattaaatttaatgcaaactta 36766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 43451603 - 43451517
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccatt 202  Q
    |||||||||| || ||||| |||||||||  ||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  43451603 aaatgttgtaatgagaaattgtgaaaagtgatagatttgatttttgaaaagttaaaaaattattgaattcaatgcaaacttatcatt 43451517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 17073105 - 17073187
Alignment:
Q  128 gggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    |||||||||||| ||||| ||| ||||||||||||||| |||||||| | || |||||||||||||||||| |||||| ||||    
T  17073105 gggaaatggtgacaagtaatagatttgacttttgaaaaattaaaaaaatgttgaattcaatgcaaacttactatttttggttt 17073187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 50673161 - 50673058
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    ||||||||||||||||||| |||||||||  ||| |||||||||| |||||||||||| ||    |||||||||||| |||| ||||||||||||| ||     
T  50673161 aaatgttgtattgggaaatagtgaaaagtgatagatttgactttttaaaagttaaaaa-ttgcagaattcaatgcaatcttatcattttttgttttgtta 50673063  T
Q  216 actag 220  Q
    |||||    
T  50673062 actag 50673058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 12060087 - 12060190
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttc 215  Q
    |||| ||||||||| ||||| ||||||||  ||| ||||| |||| ||||||||||||||| || |||||||||| ||||||| |||||| |||| |||     
T  12060087 aaatattgtattggaaaatgatgaaaagtgatagatttgagtttttaaaagttaaaaaattgttgaattcaatgccaacttactatttttagtttccttg 12060186  T
Q  216 acta 219  Q
    ||||    
T  12060187 acta 12060190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 29213403 - 29213486
Alignment:
Q  131 aaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttctt 214  Q
    |||||||||||| |  ||| |||||||||| |||||||||||||||  | |||||||||||||||||||||||||  |||||||    
T  29213403 aaatggtgaaaaatgatagatttgactttttaaaagttaaaaaattgctgaattcaatgcaaacttaccatttttaattttctt 29213486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 4298419 - 4298314
Alignment:
Q  116 aaatgttgtattgggaaa-tggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttttctt 214  Q
    |||||||||||||| ||| |||||||||||  ||| |||||||||| |||| ||||||||||| | ||||||| |||| ||||  |||||| | ||||||    
T  4298419 aaatgttgtattggaaaaatggtgaaaagtgatagatttgactttttaaaaattaaaaaattactaaattcaacgcaatcttattatttttagatttctt 4298320  T
Q  215 cactag 220  Q
     |||||    
T  4298319 aactag 4298314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 46298800 - 46298751
Alignment:
Q  157 ttttgaaaagttaaaaaattatttaattcaatgcaaacttaccatttttt 206  Q
    ||||||||| | |||||||| || |||||||||||||||||| |||||||    
T  46298800 ttttgaaaaataaaaaaattgttgaattcaatgcaaacttactatttttt 46298751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 20256116 - 20256176
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaatt 176  Q
    |||||||||||| || |||||||||||||  ||| |||||  ||| |||||||||||||||    
T  20256116 aaatgttgtattaggtaatggtgaaaagtgatagatttgatcttttaaaagttaaaaaatt 20256176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 39418146 - 39418240
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    ||||||||||||||  |||||| ||||||  ||  |||||||||| ||||||||||||||| || |||| ||| |||||||||||||||||||||    
T  39418146 aaatgttgtattggataatggtaaaaagtgatatgtttgactttttaaaagttaaaaaattgttgaatttaatacaaacttaccattttttgttt 39418240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 49483170 - 49483084
Alignment:
Q  124 tattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    |||||| ||||||||||||||  ||| ||||||||||  ||||||||||||||||| |||||||| ||||||||| |||||| ||||    
T  49483170 tattggaaaatggtgaaaagtgatagatttgactttttcaaagttaaaaaattattgaattcaattcaaacttactatttttggttt 49483084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 10567307 - 10567399
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgt 208  Q
    |||||||||||| |||||||||| |||||  | | |||||||||| |||| |||||||||| || |||||||| ||||||||  |||||||||    
T  10567307 aaatgttgtattaggaaatggtggaaagtgatggatttgactttttaaaaattaaaaaattgttaaattcaatacaaacttattattttttgt 10567399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 2940267 - 2940336
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattc 185  Q
    |||||||| |||||||||||||||||| |  | | |||||||||| ||||||||||||||| || |||||    
T  2940267 aaatgttgcattgggaaatggtgaaaaatggttgatttgactttttaaaagttaaaaaattgttgaattc 2940336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 3769879 - 3769816
Alignment:
Q  131 aaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaac 194  Q
    ||||||||||||||  ||  |||||||||| ||||||||||| ||| || ||||||||||||||    
T  3769879 aaatggtgaaaagtgataaatttgactttttaaaagttaaaatattgttaaattcaatgcaaac 3769816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 21760612 - 21760562
Alignment:
Q  155 acttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttt 205  Q
    ||||||||||| ||||||||||||| ||||||||| ||| |||||| ||||    
T  21760612 acttttgaaaaattaaaaaattattaaattcaatgtaaatttaccactttt 21760562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 35675218 - 35675296
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaac 194  Q
    |||| |||||||||||||| |||||||||  |   ||| |||||| ||||||||||| ||| || ||||||||||||||    
T  35675218 aaatattgtattgggaaatagtgaaaagtgatgaatttaactttttaaaagttaaaatattgttgaattcaatgcaaac 35675296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 32251430 - 32251340
Alignment:
Q  119 tgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    ||||||||||| ||||||||||||||  | | | |||||||| ||||||||||||||| || |||||||| ||||| ||| |||||||||||    
T  32251430 tgttgtattggtaaatggtgaaaagtgatggatctgactttt-aaaagttaaaaaattgttgaattcaatacaaacctactattttttgttt 32251340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 28014716 - 28014634
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagt-attagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttac 198  Q
    |||| |||||||||||||||||||||| | || ||||| ||||||| ||||||||||| ||| || ||| ||||||||||||||    
T  28014716 aaatattgtattgggaaatggtgaaaaatgatgagttt-gactttttaaaagttaaaatattgttgaatccaatgcaaacttac 28014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 26539194 - 26539089
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaa-ttatttaattcaatgcaaacttaccattttttgttttctt 214  Q
    |||| ||||||||  ||||| |||||| |  ||| |||||||||| |||| |||||||| || || |||||||||||||||||| |||||| |||| |||    
T  26539194 aaatattgtattgaaaaatgatgaaaattgatagatttgactttttaaaaattaaaaaaattgttgaattcaatgcaaacttactatttttagtttcctt 26539095  T
Q  215 cactag 220  Q
     |||||    
T  26539094 aactag 26539089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 31490713 - 31490822
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaa-----agtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttttgttt 210  Q
    ||||| ||||||||||||||||||||     |||  ||| ||| | |||| ||||||||||||||| || |||||||| ||||||||| |||||| ||||    
T  31490713 aaatgatgtattgggaaatggtgaaatgaaaagtgatagatttaatttttaaaaagttaaaaaattgttgaattcaatacaaacttactatttttagttt 31490812  T
Q  211 tcttcactag 220  Q
     ||| |||||    
T  31490813 ccttaactag 31490822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 21479940 - 21479849
Alignment:
Q  114 ataaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaatgcaaacttaccattttt 205  Q
    ||||||| ||||||||||||| |||||||||  | | ||| || ||| ||||||| ||| ||| || ||||||||| |||||||| ||||||    
T  21479940 ataaatgatgtattgggaaatagtgaaaagtgattgatttaacattttaaaagtttaaagattgttgaattcaatgtaaacttactattttt 21479849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 24288568 - 24288496
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaat 188  Q
    ||||||||||||| |||||||||||||||  ||| ||| |||||| |||||||| |||||| || ||||||||    
T  24288568 aaatgttgtattgagaaatggtgaaaagtgatagatttaactttttaaaagttacaaaattgttgaattcaat 24288496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 24373653 - 24373725
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattatttaattcaat 188  Q
    ||||||||||||| |||||||||||||||  ||| ||| |||||| |||||||| |||||| || ||||||||    
T  24373653 aaatgttgtattgagaaatggtgaaaagtgatagatttaactttttaaaagttacaaaattgttgaattcaat 24373725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 12349572 - 12349637
Alignment:
Q  116 aaatgttgtattgggaaatggtgaaaagtattagttttgacttttgaaaagttaaaaaattattta 181  Q
    |||||||||||  | ||||||||||||||  ||| |||||||||| ||||||||||||||| ||||    
T  12349572 aaatgttgtatatgaaaatggtgaaaagtgatagatttgactttttaaaagttaaaaaattgttta 12349637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 12349659 - 12349728
Alignment:
Q  165 agttaaaaaattatttaattcaatgcaaacttaccattttttgttttcttcactagcaccctaagggcac 234  Q
    |||||||||||| || |||||| ||||||||||||||||||| ||| ||| |||||  |||| |||||||    
T  12349659 agttaaaaaattgttgaattcattgcaaacttaccattttttatttccttaactagtgccctgagggcac 12349728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 28599717 - 28599759
Alignment:
Q  151 tttgacttttgaaaagttaaaaaattatttaattcaatgcaaa 193  Q
    |||||||||| |||||||||||| ||||| |||||||||||||    
T  28599717 tttgactttttaaaagttaaaaatttattgaattcaatgcaaa 28599759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 20423443 - 20423383
Alignment:
Q  20 gactggtaggaccaccatgtgaggtggcgccgttcaaacccttgtcgggttattgttcatc 80  Q
    |||||| || |||||| || ||||| |||||| | ||||||||||||||||| ||||||||    
T  20423443 gactggcagaaccaccgtgagaggtagcgccgcttaaacccttgtcgggttactgttcatc 20423383  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 52924 - 52984
Alignment:
Q  20 gactggtaggaccaccatgtgaggtggcgccgttcaaacccttgtcgggttattgttcatc 80  Q
    |||||| || |||||| || ||||| |||||| ||||||||||| ||||||| ||||||||    
T  52924 gactggcagaaccaccgtgagaggtagcgccgctcaaacccttgccgggttactgttcatc 52984  T

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