View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18854_low_7 (Length: 246)
Name: NF18854_low_7
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18854_low_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 106 - 246
Target Start/End: Complemental strand, 32647049 - 32646919
Alignment:
| Q |
106 |
aaaaaggcatttcatgtcatgagactcatgaccgtggataaaaaatgagatattgaacacatggcctcacatggaacagaggccgaatgattgcatgtct |
205 |
Q |
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| T |
32647049 |
aaaaaggcatttcatgtcatgagactcgtgaccgtggataaaaaatgagatgttgaacacatgg----------aacagaggccgaatgattgcatgtct |
32646960 |
T |
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| Q |
206 |
ctgttccatgtgatgctagcttataccatcagaaatacaaa |
246 |
Q |
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| T |
32646959 |
ctgttccatgtgatgctagcttataccttcagaaatacaaa |
32646919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 32647214 - 32647126
Alignment:
| Q |
20 |
aatcttagatcatgctctacaggtcatgctctacttccatgttttgtgaaggataaacaatttccaagccaagaatctatattctaaaa |
108 |
Q |
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| T |
32647214 |
aatcttagatcatgctctacaggtcatgctctacttccatgttttgtgaaggataaacaatttccaagccaagaatctatattctaaaa |
32647126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 32652638 - 32652549
Alignment:
| Q |
156 |
tattgaacacatggcctcacatggaacagaggccgaatgattgcatgtctctgttccat-gtgatgctagcttataccatcagaaatacaaa |
246 |
Q |
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| T |
32652638 |
tattgaacacatggcctcacatgaaacagaagcagaataattgcacgtctc--ttcaatggtgatgctagcttatactatcagaaatacaaa |
32652549 |
T |
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