View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18854_low_9 (Length: 220)
Name: NF18854_low_9
Description: NF18854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18854_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 37525966 - 37526172
Alignment:
| Q |
24 |
ccactgttatgtagtatttgtgttattatttgcctttcatttcaattcaattcaagtaaatgaaaaaagcatctccctcactc----------tctttta |
113 |
Q |
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| T |
37525966 |
ccactgttatgtagtatttgtgttattatttgcctttcatttcaattcaattcaagtaaatgaaaaaagcatctccctctctccctcactctttctttta |
37526065 |
T |
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| Q |
114 |
cgtacaacacctcactctcagggcccctttctttatcatcttcatgttcattcaaccactcaactcaatcttaaaaaactaacaataaatcaatcactca |
213 |
Q |
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| T |
37526066 |
cgtacaacacctcactctcagggcccctttctttatcatcttcatgttcattcaaccactcaactcaatcttaaaaaactaacaataaatcaatcactca |
37526165 |
T |
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| Q |
214 |
cacattc |
220 |
Q |
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||||||| |
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| T |
37526166 |
cacattc |
37526172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37528720 - 37528688
Alignment:
| Q |
1 |
tgaatttttattttaccttctctccactgttat |
33 |
Q |
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| T |
37528720 |
tgaatttttattttaccttctctctactgttat |
37528688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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