View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18855_high_16 (Length: 248)

Name: NF18855_high_16
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18855_high_16
NF18855_high_16
[»] chr4 (2 HSPs)
chr4 (46-239)||(55331017-55331210)
chr4 (43-145)||(55336449-55336551)
[»] chr2 (10 HSPs)
chr2 (45-248)||(8395289-8395492)
chr2 (45-248)||(8406080-8406283)
chr2 (45-146)||(8439297-8439398)
chr2 (58-120)||(8368479-8368541)
chr2 (58-120)||(8400869-8400931)
chr2 (97-143)||(8404185-8404231)
chr2 (58-120)||(8422446-8422508)
chr2 (45-146)||(8375705-8375806)
chr2 (45-146)||(8412200-8412301)
chr2 (45-146)||(8434298-8434399)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 55331017 - 55331210
Alignment:
Q  46 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331017 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 55331116  T
Q  146 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331117 tgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttct 55331210  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 55336449 - 55336551
Alignment:
Q  43 gcaggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttct 142  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |||||||    
T  55336449 gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct 55336548  T
Q  143 cca 145  Q
    |||    
T  55336549 cca 55336551  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 8395492 - 8395289
Alignment:
Q  45 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 144  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8395492 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8395393  T
Q  145 atgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctctgct 244  Q
    ||   || ||| |||||||  ||  |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| ||||| || |    
T  8395392 attgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttgtt 8395293  T
Q  245 cctc 248  Q
    ||||    
T  8395292 cctc 8395289  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 248
Target Start/End: Original strand, 8406080 - 8406283
Alignment:
Q  45 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 144  Q
    ||||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| ||||||||||| |||    
T  8406080 aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc 8406179  T
Q  145 atgaaacacttcacatcttgttctgtttgatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctctgct 244  Q
    ||   || ||| |||||||  ||  |  ||||||||||||| | |||  |||  || | |||| |||| |||||||| ||||||||||| ||||| || |    
T  8406180 attgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttgtt 8406279  T
Q  245 cctc 248  Q
    ||||    
T  8406280 cctc 8406283  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 8439297 - 8439398
Alignment:
Q  45 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 144  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||||||||||||| || |||    
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  145 at 146  Q
    ||    
T  8439397 at 8439398  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 8368479 - 8368541
Alignment:
Q  58 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 120  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8368479 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8368541  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 8400931 - 8400869
Alignment:
Q  58 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 120  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8400931 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8400869  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 8404185 - 8404231
Alignment:
Q  97 cctaataaaggaagtggataagctttgtcaagtgccaaaactttctc 143  Q
    |||||||||||||||||||| ||||| ||||| |||||||| |||||    
T  8404185 cctaataaaggaagtggataggctttatcaagagccaaaaccttctc 8404231  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 8422508 - 8422446
Alignment:
Q  58 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 120  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||| ||||||||||||    
T  8422508 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct 8422446  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 8375806 - 8375705
Alignment:
Q  45 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 144  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8375806 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8375707  T
Q  145 at 146  Q
    ||    
T  8375706 at 8375705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 8412200 - 8412301
Alignment:
Q  45 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 144  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8412200 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8412299  T
Q  145 at 146  Q
    ||    
T  8412300 at 8412301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 8434298 - 8434399
Alignment:
Q  45 aggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcc 144  Q
    ||||||||||  |||||||| | |||||| |||  |||||||||||||  | || ||||||||||| || || ||||| |||| ||||||||| || |||    
T  8434298 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8434397  T
Q  145 at 146  Q
    ||    
T  8434398 at 8434399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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