View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18855_high_4 (Length: 503)
Name: NF18855_high_4
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18855_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 5316351 - 5315865
Alignment:
| Q |
1 |
acaaaaagtcacaaaataaaattgg-caatattataatctgcaagaagagcacatatata-ttttttgaacaatatattatattactacatttaaaatat |
98 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316351 |
acaaaaagtcacaaaataaaattgtacaatattataatctgcaagaagagcacatattttgttttttgaacaatatattatattactacatttaaaatat |
5316252 |
T |
|
| Q |
99 |
aattcattagttacaaacatcttcatcgtctttaacatgttaacgccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316251 |
aattcattagttacaaacatcttcatcgtctctaacatgttaacaccattttcttcttaattataaatgatattttgtcaaataattaaagagctattgt |
5316152 |
T |
|
| Q |
199 |
tagaatatacagctaatttgttataaaaattatgaaactaacacaattgtattactattttaatacgacggtatacaagttgaaacattagatgaaattc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316151 |
tagaatatacagctaatttgttataaaaattatgaaactaacacaattgtattactattttaatacgacggtatacaagttgaaacattagatgaaattc |
5316052 |
T |
|
| Q |
299 |
catcattacataaaaattaaacaaatttgaaatcgatgcataaaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaag |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5316051 |
catcattacataaaaattaaacaaatttgaaatcgatacataaaaataaataagcatctcatatagccacgctgcgcaaaacaaccgtttcaatggtaag |
5315952 |
T |
|
| Q |
399 |
tcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtcttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5315951 |
tcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgtcttcaatccgtctttagttgatttctttctcatttc |
5315865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 299 - 485
Target Start/End: Original strand, 5288878 - 5289065
Alignment:
| Q |
299 |
catcattacataaaaattaaacaaatttgaaatcgatgcata-aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaa |
397 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||| | | ||||||| || |||||||||| |||| || || |||||||| ||||||||||||| |
|
|
| T |
5288878 |
catccttacataaaagttaaacaaatttgaaatcaatgaaaataaaataattaaacatctcatatggccacactacgtaaaacaacagtttcaatggtaa |
5288977 |
T |
|
| Q |
398 |
gtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtcttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5288978 |
gtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtcttcaatccgtctatggttgatttctttctcatttc |
5289065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 282 - 485
Target Start/End: Complemental strand, 5303458 - 5303250
Alignment:
| Q |
282 |
aacattagatgaaattccatcattacataaaaattaaacaaatttgaaatcgatgcataaaaataaac-----aagcatctcatatagccatgctgcgca |
376 |
Q |
| |
|
|||| ||||||||||| |||| |||| ||||||||||||||||| |||| ||| ||| |||| ||| |||||||||||||||| | ||||||| |
|
|
| T |
5303458 |
aacactagatgaaatttcatccttacgtaaaaattaaacaaattgaaaattgatacatgaaaacaaaataattaagcatctcatatagcgacactgcgca |
5303359 |
T |
|
| Q |
377 |
aaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtcttcaatccgtctatagttgatttctt |
476 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
5303358 |
aaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaacccatctttagttgatttctt |
5303259 |
T |
|
| Q |
477 |
tctcatttc |
485 |
Q |
| |
|
||||||||| |
|
|
| T |
5303258 |
tctcatttc |
5303250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 350 - 485
Target Start/End: Complemental strand, 5285197 - 5285062
Alignment:
| Q |
350 |
aagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgt |
449 |
Q |
| |
|
||||||||||||| || | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5285197 |
aagcatctcatatggcaacactgcgcaaaacaacggtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgt |
5285098 |
T |
|
| Q |
450 |
cttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |
|
|
| T |
5285097 |
cttcaatccgttttgagttgatttctttctcatttc |
5285062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 281 - 485
Target Start/End: Complemental strand, 5311359 - 5311151
Alignment:
| Q |
281 |
aaacattagatgaaattccatcattacataaaaattaaacaaatttgaaatcgatgcataaaaataaac----aagcatctcatatagccatgctgcgca |
376 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| |||||||||| |||||||| || |||||||| || |||||||||| | || || |||| |
|
|
| T |
5311359 |
aaacactagatgaaattacatccatacataaaagataaacaaattataaatcgataaatgaaaataaaatattaaacatctcatatggtcacactacgca |
5311260 |
T |
|
| Q |
377 |
aaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtcttcaatccgtctatagttgatttctt |
476 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||||||||| |
|
|
| T |
5311259 |
aaacaactgtttcaatggtaagtcctggtccaaaaccaaataatacaccccactcaagtccttctcccgttgtcttcaatccgttttgagttgatttctt |
5311160 |
T |
|
| Q |
477 |
tctcatttc |
485 |
Q |
| |
|
||||||||| |
|
|
| T |
5311159 |
tctcatttc |
5311151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 341 - 485
Target Start/End: Original strand, 46706212 - 46706356
Alignment:
| Q |
341 |
aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
440 |
Q |
| |
|
||||||| |||||| ||||||||| | ||| |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
46706212 |
aaaataattaagcatttcatatagcgacactgtgcaaaacaacagtttctatggtaagtcctggtccaaagccaaataacacaccccattcaagtccttc |
46706311 |
T |
|
| Q |
441 |
tccagttgtcttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
||| |||||||||| || ||| ||||||||||||||||||||| |
|
|
| T |
46706312 |
tcctgttgtcttcagaccatcttgagttgatttctttctcatttc |
46706356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 5285276 - 5285233
Alignment:
| Q |
282 |
aacattagatgaaattccatcattacataaaaattaaacaaatt |
325 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
5285276 |
aacactagatgaaatttcatccttacataaaaattaaacaaatt |
5285233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 341 - 485
Target Start/End: Complemental strand, 1505875 - 1505731
Alignment:
| Q |
341 |
aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
440 |
Q |
| |
|
||||||| |||||||||||||||| | || ||||||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
1505875 |
aaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatagtaagtcccggtccaaagccaaataacacaccccattcatgtccttc |
1505776 |
T |
|
| Q |
441 |
tccagttgtcttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
||| || ||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
1505775 |
tccggtagtcttcaatccatcttgagctgatttctttctcatttc |
1505731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 485
Target Start/End: Complemental strand, 1493057 - 1492922
Alignment:
| Q |
350 |
aagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgt |
449 |
Q |
| |
|
|||||||| ||||||| | |||||||| ||||| || ||||||||||||||||||||||| || |||| |||||||||||| | |||||||| ||||| |
|
|
| T |
1493057 |
aagcatcttatatagctacactgcgcaagacaacagtctcaatggtaagtcctggtccaaagccgaatagcacaccccattcatgcccttctccggttgt |
1492958 |
T |
|
| Q |
450 |
cttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
|||||| || | | ||||||||||||||||||||| |
|
|
| T |
1492957 |
cttcaaaccattttgagttgatttctttctcatttc |
1492922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 357 - 452
Target Start/End: Complemental strand, 1483075 - 1482980
Alignment:
| Q |
357 |
tcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgtctt |
452 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||||| |||||||| || || || |||||||| ||||| |||||||| || ||||| |
|
|
| T |
1483075 |
tcatatagccacactgtgcaaaacaacggtttcaatggtaagtccaggtccaaagccgaacaacacaccccaatcaagcccttctcctgtggtctt |
1482980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 485
Target Start/End: Complemental strand, 1487559 - 1487424
Alignment:
| Q |
350 |
aagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttgt |
449 |
Q |
| |
|
|||||||||||||| |||| || | | |||||| ||||||||||||||||| |||||||| || || || || ||||||| |||||||||||| || || |
|
|
| T |
1487559 |
aagcatctcatataaccatactatggagaacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcctgtggt |
1487460 |
T |
|
| Q |
450 |
cttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
|| | ||| ||| || |||| ||||||||||||| |
|
|
| T |
1487459 |
ctcaagtccctcttgagctgatctctttctcatttc |
1487424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 1500105 - 1500039
Alignment:
| Q |
374 |
gcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
440 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| | || |||||||||||||| ||||||| |
|
|
| T |
1500105 |
gcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttc |
1500039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 1478860 - 1478798
Alignment:
| Q |
378 |
aacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
440 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| ||||| || |||||||| ||||| ||||| |
|
|
| T |
1478860 |
aacaactgtttcaatggtgagtccaggtccaaagccaaacaacacaccccagtcaaggccttc |
1478798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 341 - 485
Target Start/End: Complemental strand, 44133677 - 44133533
Alignment:
| Q |
341 |
aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
440 |
Q |
| |
|
|||||||| ||||| |||||||||| || || ||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
44133677 |
aaaataaataagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaattcaagtccttc |
44133578 |
T |
|
| Q |
441 |
tccagttgtcttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
||| || ||||||||||| ||| || ||| |||||||||||||| |
|
|
| T |
44133577 |
tcctgtggtcttcaatccatcttgagctgacttctttctcatttc |
44133533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 341 - 485
Target Start/End: Complemental strand, 44129472 - 44129328
Alignment:
| Q |
341 |
aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
440 |
Q |
| |
|
||||||| ||||| |||||||||| | |||||||||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| ||||||||||| |
|
|
| T |
44129472 |
aaaataattaagcacctcatatagcgacactgcgcaaaacaacagtttcaatagtaagacctggtccaaagccaaataaaacaccccactcaagtccttc |
44129373 |
T |
|
| Q |
441 |
tccagttgtcttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
||| || ||||||| ||| ||| || ||| |||||||||||||| |
|
|
| T |
44129372 |
tcccgtggtcttcagtccatcttgagctgacttctttctcatttc |
44129328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 485
Target Start/End: Complemental strand, 44142099 - 44141955
Alignment:
| Q |
341 |
aaaataaacaagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
440 |
Q |
| |
|
||||||| ||||| |||||||||| | ||||| |||||||| |||||||||||||| || |||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
44142099 |
aaaataattaagcacctcatatagcgacactgcgtaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttc |
44142000 |
T |
|
| Q |
441 |
tccagttgtcttcaatccgtctatagttgatttctttctcatttc |
485 |
Q |
| |
|
||| || ||||||||||| ||| || ||| |||||||||||||| |
|
|
| T |
44141999 |
tcccgtggtcttcaatccatcttgagctgacttctttctcatttc |
44141955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 24163022 - 24163125
Alignment:
| Q |
349 |
caagcatctcatatagccatgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctccagttg |
448 |
Q |
| |
|
||||||| ||||||||||| ||| | | ||||| ||||||||||||||||||||| ||||| | || || |||||||||||||| |||||||| || | |
|
|
| T |
24163022 |
caagcatatcatatagccacactgtggagaacaatcgtttcaatggtaagtcctggcccaaagcttaacaacacaccccattcaagcccttctcctgtgg |
24163121 |
T |
|
| Q |
449 |
tctt |
452 |
Q |
| |
|
|||| |
|
|
| T |
24163122 |
tctt |
24163125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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