View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18855_low_12 (Length: 299)
Name: NF18855_low_12
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18855_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 56232482 - 56232372
Alignment:
| Q |
19 |
cagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgggactaatcgctcctgagtacgcagcaataatgttcacaccgggtgcggt |
118 |
Q |
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| T |
56232482 |
cagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgggactaatcgctcctgagtacgcagcaataatgttcacaccgggtgcggt |
56232383 |
T |
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| Q |
119 |
tacatccggct |
129 |
Q |
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||||||||||| |
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| T |
56232382 |
tacatccggct |
56232372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 175 - 289
Target Start/End: Complemental strand, 56232326 - 56232208
Alignment:
| Q |
175 |
ctacgactaactcgtgtaatttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag- |
273 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56232326 |
ctacgaccaactcgtgtaatttggaaaatactaagttaggaaacaaaatatgtagtatgatttatgacgcaatgtttgaaattaataatgaaagaatagg |
56232227 |
T |
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| Q |
274 |
---accttgaggatctctg |
289 |
Q |
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| T |
56232226 |
caaaccttgaggatctctg |
56232208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 39190297 - 39190187
Alignment:
| Q |
19 |
cagacatggtaatgaaaggaaccctacgtttatcaaagtccaattctgtgggactaatcgctcctgagtacgcagcaataatgttcacaccgggtgcggt |
118 |
Q |
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||||||| || |||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39190297 |
cagacattgtcatgaaaggaaccctacgtttatcagaatccaattttgtgggactaaccgctcctgagtaggcagcaataatgttcacaccgggtgcggt |
39190198 |
T |
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| Q |
119 |
tacatccggct |
129 |
Q |
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|||||| |||| |
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| T |
39190197 |
tacatctggct |
39190187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 39218836 - 39218756
Alignment:
| Q |
195 |
ttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatagac |
275 |
Q |
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||||||||||||| ||||||||| |||||||| || ||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
39218836 |
ttggaaaatactatgttaggaaataaaatatgtagtatgatttgtgacacaatgtttgaaattaataatgaaagaatagac |
39218756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 289
Target Start/End: Complemental strand, 39190098 - 39189998
Alignment:
| Q |
192 |
aatttggaaaatactaagttaggaaacaaaatatgcagcatgatttatgacgcaatgtttgaaattaataatgaaagaatag----accttgaggatctc |
287 |
Q |
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|||||||||||||| | ||||||||| |||||||| || ||||||| |||| || ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39190098 |
aatttggaaaataccatgttaggaaataaaatatgtagtatgatttgtgacaca-tgtttgaaattaataatgaaagaataggcaaaccttgaggatctc |
39190000 |
T |
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| Q |
288 |
tg |
289 |
Q |
| |
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|| |
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|
| T |
39189999 |
tg |
39189998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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