View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18855_low_14 (Length: 268)

Name: NF18855_low_14
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18855_low_14
NF18855_low_14
[»] chr4 (2 HSPs)
chr4 (1-254)||(55330681-55330934)
chr4 (3-156)||(55336217-55336370)
[»] chr2 (11 HSPs)
chr2 (45-254)||(8375923-8376132)
chr2 (45-254)||(8411874-8412083)
chr2 (45-254)||(8433972-8434181)
chr2 (44-147)||(8431120-8431223)
chr2 (45-134)||(8439091-8439180)
chr2 (45-254)||(8395606-8395818)
chr2 (45-147)||(8405864-8405966)
chr2 (45-131)||(8417215-8417301)
chr2 (45-254)||(8416955-8417164)
chr2 (19-152)||(8403900-8404033)
chr2 (185-254)||(8405754-8405823)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 55330934 - 55330681
Alignment:
Q  1 aaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaa 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  55330934 aaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaatatagcattaaaggttaataagagtttagcaa 55330835  T
Q  101 ttgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattagg 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330834 ctgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattagg 55330735  T
Q  201 tgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330734 tgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaat 55330681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 55336370 - 55336217
Alignment:
Q  3 ggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaatt 102  Q
    |||| |||| ||||||||||||||||| || |  ||||| |||||||| ||||| |||||||||||||||||||| ||| ||||||||||| | |||||     
T  55336370 ggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaatatagcattgaagattaacaagagtatggcaata 55336271  T
Q  103 gctggtccattactcactggaattgcagctataggttctgcatttgtaggaaac 156  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55336270 gcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaac 55336217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 8375923 - 8376132
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 144  Q
    |||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||  ||    
T  8375923 tgaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgaca 8376022  T
Q  145 tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg 244  Q
    |||||||| |    |||| | || ||| | ||| || |  ||||||||||||| | | ||||| | ||| ||||||| |||||||||||| |||| ||||    
T  8376023 tttgtaggtagtggttctttggctgcttttgttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatgg 8376122  T
Q  245 tatttgaaat 254  Q
    | ||||||||    
T  8376123 tttttgaaat 8376132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 8412083 - 8411874
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 144  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||| ||    
T  8412083 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca 8411984  T
Q  145 tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg 244  Q
    |||||||| || | |||| | || ||  | ||| || || || |||||||||| | | |||  || ||| ||||||| |||||||||||| |||| ||||    
T  8411983 tttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatgg 8411884  T
Q  245 tatttgaaat 254  Q
    | ||||||||    
T  8411883 tttttgaaat 8411874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 8434181 - 8433972
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 144  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||| ||    
T  8434181 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca 8434082  T
Q  145 tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg 244  Q
    |||||||| || | |||| | || ||  | ||| || || || |||||||||| | | |||  || ||| ||||||| |||||||||||| |||| ||||    
T  8434081 tttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatgg 8433982  T
Q  245 tatttgaaat 254  Q
    | ||||||||    
T  8433981 tttttgaaat 8433972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 8431223 - 8431120
Alignment:
Q  44 ttgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgc 143  Q
    ||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| || ||||||||| | ||||||||||||||||| ||| |    
T  8431223 ttgaagattatgatagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattactctcaggaattgcagctataggatctac 8431124  T
Q  144 attt 147  Q
    ||||    
T  8431123 attt 8431120  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 8439180 - 8439091
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctat 134  Q
    |||||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||||||    
T  8439180 tgaagattatgacagacttggaaacatagcattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctat 8439091  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 254
Target Start/End: Original strand, 8395606 - 8395818
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 144  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||| ||    
T  8395606 tgaagattatgacagacttggaaacatagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctaca 8395705  T
Q  145 tttgtaggaaac---aattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggta 241  Q
    ||| | || ||    | |||| | || ||  | ||| || |  ||||||||||||| | | ||| | | ||| ||||||||||||||||||||||||| |    
T  8395706 tttattggcaatggtagttctttggctgcatttgttcctctcttggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggca 8395805  T
Q  242 tggtatttgaaat 254  Q
    |||| ||||||||    
T  8395806 tggtttttgaaat 8395818  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 8405966 - 8405864
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 144  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||| ||    
T  8405966 tgaagattatgacagacttggaaacatagctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctaca 8405867  T
Q  145 ttt 147  Q
    |||    
T  8405866 ttt 8405864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 8417301 - 8417215
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagc 131  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| |||||||||||    
T  8417301 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagc 8417215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 8417164 - 8416955
Alignment:
Q  45 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 144  Q
    |||||||||| | || |||||||| ||||| || |||||  ||||||||||||||||||| || ||||||||||| |||||||| ||||| || ||| ||    
T  8417164 tgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgccgctattggatctaca 8417065  T
Q  145 tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg 244  Q
    ||| |||| ||    ||| | || ||  | ||| || || ||||||||||||| | | ||| ||| ||| ||||||| |||||||||||| |||| ||||    
T  8417064 tttataggcaatggctctttggctgcctttgttcctctattggctggttcattggcttctgcagttaatacttttgagcatggtggacaagttggcatgg 8416965  T
Q  245 tatttgaaat 254  Q
    | ||||||||    
T  8416964 tttttgaaat 8416955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 8404033 - 8403900
Alignment:
Q  19 attgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactca 118  Q
    |||||||| ||||| |  ||||||||||| |||||||| ||| | || ||||| ||||||||| ||||||||||||||||||||   || || ||  | |    
T  8404033 attgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaa 8403934  T
Q  119 ctggaattgcagctataggttctgcatttgtagg 152  Q
    | ||||||||||||||||| ||  ||||||||||    
T  8403933 caggaattgcagctatagggtcatcatttgtagg 8403900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 8405823 - 8405754
Alignment:
Q  185 tggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaat 254  Q
    ||||||||||||| | | ||| | | ||| |||||||||||||||||||| |||| ||||| ||||||||    
T  8405823 tggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaat 8405754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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