View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18855_low_16 (Length: 254)
Name: NF18855_low_16
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18855_low_16 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 56231921 - 56232160
Alignment:
| Q |
15 |
cacagattacttatgcagatggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctctctccttttctcatcccttcatttgtata |
114 |
Q |
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| T |
56231921 |
cacagattacttatgcagatggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctctctccttttctcatcccttcatttgtata |
56232020 |
T |
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| Q |
115 |
gttggtcttcatagataattcaattatttcaacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggat |
214 |
Q |
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| T |
56232021 |
gttggtcttcatagataattcaattatttcaacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccactaggat |
56232120 |
T |
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| Q |
215 |
atattcatccacccacaacaaagttgaacataaaacctgc |
254 |
Q |
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| T |
56232121 |
atattcatccacccacaacaaagttgaacataaaacctgc |
56232160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 39189713 - 39189950
Alignment:
| Q |
13 |
agcacagattacttatgcagatggcgttgctctctttgcctacatcaattcaaccaagtaacttttgttgctctctccttttctcatcccttcatttgta |
112 |
Q |
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| T |
39189713 |
agcacatattatttatgaagatggtgttgctgtctttgcctacatcaattcaaccaagtaacttttgttgctc-ctccttttgtcatcccttcatttgct |
39189811 |
T |
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| Q |
113 |
tagt--tggtcttcatagataattcaattatttcaacattgttctcttaacaccttacctttaatcaatgtcgttattatcacataacaggaatccacta |
210 |
Q |
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| T |
39189812 |
ccctccttttcttcatagataattcaattaattcaacattgttctcttaacaccgt-----taattaatgtcgttattatcatataataggaatccacta |
39189906 |
T |
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| Q |
211 |
ggatatattcatccacccacaacaaagttgaacataaaacctgc |
254 |
Q |
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| T |
39189907 |
ggatatattcatccacccacaacaaagttgaaaataaaacctgc |
39189950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 11096813 - 11096753
Alignment:
| Q |
194 |
ataacaggaatccactaggatatattcatccacccacaacaaagttgaacataaaacctgc |
254 |
Q |
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| T |
11096813 |
ataacaagaatccactaggatacattcatccactctcaacaaagttgagcataaagcctgc |
11096753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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