View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18855_low_19 (Length: 241)
Name: NF18855_low_19
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18855_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 13959961 - 13960174
Alignment:
| Q |
12 |
ataggtggaggaacaagtggctgatgagcttcttcatgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgttta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13959961 |
ataggtggaggaacaagtggctgatgagcttcttcatgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgttta |
13960060 |
T |
|
| Q |
112 |
gtgttgttgtagataattgtcctgtcccacgtagaagaagatcaagtcttgaatataaaggccaagatgaaacatctgaactagctgattctgatctata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13960061 |
gtgttgttgtagataattgtcctgtcccacgtagaagaagatcaagtctagaatataaaggccaagatgaaacatctgaactagctgattctgatctata |
13960160 |
T |
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| Q |
212 |
ccttttcttcattg |
225 |
Q |
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|||||||||||||| |
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| T |
13960161 |
ccttttcttcattg |
13960174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 4029160 - 4028947
Alignment:
| Q |
12 |
ataggtggaggaacaagtggctgatgagcttcttcatgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgttta |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4029160 |
ataggtggaggaacaagtggctgatgaacttcttcttgtgcatgtgacataacaagtgatgatggttccaacaaaaccaaacctgcttgattattgttta |
4029061 |
T |
|
| Q |
112 |
gtgttgttgtagataattgtcctgtcccacgtagaagaagatcaagtcttgaatataaaggccaagatgaaacatctgaactagctgattctgatctata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4029060 |
gtgttgttgtagataattgtcctgtcccacgtagaagaagatcaagtctagaatacaaaggccaagatgaaacatctgaactagctgattctgatctata |
4028961 |
T |
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| Q |
212 |
ccttttcttcattg |
225 |
Q |
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|||||||||||||| |
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| T |
4028960 |
ccttttcttcattg |
4028947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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