View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18855_low_5 (Length: 431)
Name: NF18855_low_5
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18855_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 3972999 - 3973409
Alignment:
| Q |
21 |
gattcagggtgaaaactagaaggtgcaggtctaggtttcggtctcacatagctactatactcagtagcaagagcttcatcaccataagcagaaggttgag |
120 |
Q |
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| T |
3972999 |
gattcagggtgaaaactagaaggtgcaggtctaggtttcggtctcacatagctactatactcagtagcaagagcttcatcaccataagcagaaggttgag |
3973098 |
T |
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| Q |
121 |
cataagattcaaattgaggacgatcataatcaaaatcattgtttgatgaacctgatgggtaacatgtttcatcggaaggtggaattggtctaccgtaggt |
220 |
Q |
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| T |
3973099 |
cataagattcaaattgaggacgatcataatcaaaatcattgtttgatgaacctgatgggtaacatgtttcatcggaaggtggaattggtctaccgtaggt |
3973198 |
T |
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| Q |
221 |
aaggtgaatgtcgtatccaccaccgtatggtgttggatcgtattcgtcgaaatcatcgacactttcgtcgccgtttccgccacgagtgaagtatgacatt |
320 |
Q |
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| T |
3973199 |
aaggtgaatgtcgtatccaccaccgtatggtgttggatcgtattcgtcgaaatcatcgacactttcgtcgccgtttccgccacgagtgaagtatgacatt |
3973298 |
T |
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| Q |
321 |
gtttcttgatcggnnnnnnnggttcagcgaattgaataaggatgatgaatttcaggatctaaagtgttatttatacttgtctgggaaaaatcagtggttg |
420 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3973299 |
gtttcttgatcggtttttttggttcagcgaattgaataaggatgatgaatttcaggatctaaagtgttatttatacttgtctgagaaaaatcagtggttg |
3973398 |
T |
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| Q |
421 |
aaagttgaaac |
431 |
Q |
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| T |
3973399 |
aaagttgaaac |
3973409 |
T |
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