View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18855_low_8 (Length: 372)

Name: NF18855_low_8
Description: NF18855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18855_low_8
NF18855_low_8
[»] chr1 (5 HSPs)
chr1 (231-367)||(32810666-32810802)
chr1 (92-164)||(32810527-32810599)
chr1 (19-77)||(32809693-32809751)
chr1 (29-80)||(32803243-32803294)
chr1 (29-77)||(16578604-16578652)
[»] chr6 (1 HSPs)
chr6 (276-356)||(7599000-7599078)
[»] chr5 (1 HSPs)
chr5 (29-64)||(3332399-3332434)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 231 - 367
Target Start/End: Original strand, 32810666 - 32810802
Alignment:
Q  231 ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgtaaatatgctattaagtaattt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32810666 ctagagttacatatatttaaaacatgatagagaactaaatgacagaggatgcttagttgaattaataaattattagtgtaaatatgctatttagtaattt 32810765  T
Q  331 ttatatattagttgttatttgtaattcctatgcttct 367  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  32810766 ttatatattagttattatttgtaattcctatgtttct 32810802  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 32810527 - 32810599
Alignment:
Q  92 aaccttgtaagttgtaaccatttcagctactagcacactatccaacccaacaaacattgttaccggttggttg 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32810527 aaccttgtaagttgtaaccatttcagctactagcacactatccaacccaacaaacattgttaccggttggttg 32810599  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 32809693 - 32809751
Alignment:
Q  19 aattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32809693 aattgtgctatgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc 32809751  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 32803243 - 32803294
Alignment:
Q  29 tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttcgac 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32803243 tgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgac 32803294  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 16578652 - 16578604
Alignment:
Q  29 tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttc 77  Q
    ||||||| || || |||||||||||||||||||||||||| ||||||||    
T  16578652 tgttttttgaaccgggtggtcttcctcttggtcttcggtttccaatttc 16578604  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 7599078 - 7599000
Alignment:
Q  276 aggatgcttagttgaattaataaattattagtgtaaatatgctattaagtaatttttatatattagttgttatttgtaatt 356  Q
    ||||||||||||||  | |||||||||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||    
T  7599078 aggatgcttagttgtgtcaataaattattagt-taaatatgttatttagta-tttttatatattagttgttatttgtaatt 7599000  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 3332399 - 3332434
Alignment:
Q  29 tgtttttggatccaggtggtcttcctcttggtcttc 64  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3332399 tgtttttggatccagctggtcttcctcttggtcttc 3332434  T

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