View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_high_10 (Length: 431)
Name: NF18856_high_10
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 35818077 - 35818308
Alignment:
| Q |
156 |
tttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaagattgtaataaaaaatgaacacttgaagatatcaa |
255 |
Q |
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| T |
35818077 |
tttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaagattgtaataaaaaatgaacacttgaagatatcaa |
35818176 |
T |
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| Q |
256 |
aatgagaatccnnnnnnngtatacattattttatcatagtggtatatttaaggagaaaactaagatgtaataccataagtactgcttttgttgttcgtct |
355 |
Q |
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| T |
35818177 |
aatgagaatccaaaaaaagtatacattattttatcatagtggtatatttaaggagaaaactaagatgtaataccataagtactgcttttgttgttcgtct |
35818276 |
T |
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| Q |
356 |
aacaaagaggcagttattttacacccttttaa |
387 |
Q |
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| T |
35818277 |
aacaaagaggcagttattttacacccttttaa |
35818308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 35817984 - 35818078
Alignment:
| Q |
14 |
gaacctgtgtaccacatatatattttttgttttcgagaaaggataggtgggttaatatgtacctattaaaagacctacatgcaataccagcagtgtt |
110 |
Q |
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| T |
35817984 |
gaacctgtgtaccacattttt--tttttgttttcgagaaaggataggtgggttagtatgtacctattaaaagacctacatgcaatatcagcagtgtt |
35818078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 47703451 - 47703367
Alignment:
| Q |
138 |
ataacaccaatgctctaatttcgccaaaccagctttgacaaattctccattactaaatgagcagcactcccatctttaaagaaga |
222 |
Q |
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| T |
47703451 |
ataacaccaatgctccaattcagccagaccagctttcacatattctccattactaaatgagcagcactcccgtcttaagagaaga |
47703367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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