View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18856_high_18 (Length: 358)
Name: NF18856_high_18
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_high_18 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 33811573 - 33811217
Alignment:
| Q |
1 |
actctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811573 |
actctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttc |
33811475 |
T |
|
| Q |
101 |
ttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaatttttaccaccgcaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33811474 |
ttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagct |
33811375 |
T |
|
| Q |
201 |
attattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811374 |
attattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagcc |
33811275 |
T |
|
| Q |
301 |
aaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttac |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33811274 |
aaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttac |
33811217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 33816491 - 33816135
Alignment:
| Q |
1 |
actctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816491 |
actctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttc |
33816393 |
T |
|
| Q |
101 |
ttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaatttttaccaccgcaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33816392 |
ttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagct |
33816293 |
T |
|
| Q |
201 |
attattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816292 |
attattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagcc |
33816193 |
T |
|
| Q |
301 |
aaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttac |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33816192 |
aaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttac |
33816135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 33807919 - 33807638
Alignment:
| Q |
1 |
actctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807919 |
actctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttc |
33807821 |
T |
|
| Q |
101 |
ttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaatttttaccaccgcaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33807820 |
ttattttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagct |
33807721 |
T |
|
| Q |
201 |
attattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807720 |
attattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 50603107 - 50603003
Alignment:
| Q |
1 |
actctatgtgagtgaggattgtg-----ttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgctt |
95 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| || | |||||||| ||||||||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
50603107 |
actctgtgtgagtgaggattgtgctatgttgtggtgtgtttgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgctt |
50603008 |
T |
|
| Q |
96 |
ggttc |
100 |
Q |
| |
|
||||| |
|
|
| T |
50603007 |
ggttc |
50603003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 337
Target Start/End: Original strand, 25003452 - 25003511
Alignment:
| Q |
278 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctg |
337 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| | | |||||||||||||||||| |
|
|
| T |
25003452 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctg |
25003511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 307
Target Start/End: Complemental strand, 14178355 - 14178325
Alignment:
| Q |
277 |
accaacaattctccccctccagccaaaggga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178355 |
accaacaattctccccctccagccaaaggga |
14178325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Original strand, 28607519 - 28607548
Alignment:
| Q |
278 |
ccaacaattctccccctccagccaaaggga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607519 |
ccaacaattctccccctccagccaaaggga |
28607548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 31152239 - 31152298
Alignment:
| Q |
19 |
ttgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaacc |
78 |
Q |
| |
|
||||||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
31152239 |
ttgtgttgtggtgtgattgctttgctgaagctcttctctatttatagagagatttgaacc |
31152298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 307
Target Start/End: Complemental strand, 12935084 - 12935055
Alignment:
| Q |
278 |
ccaacaattctccccctccagccaaaggga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935084 |
ccaacaattctccccctccagccaaaggga |
12935055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University