View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_high_22 (Length: 339)
Name: NF18856_high_22
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 39054734 - 39054470
Alignment:
| Q |
19 |
tcatcagcaggtgtggccataaggttcctatgtttacatcatgtatattattaattaatagtctttttgagaagctaaagttacaacaaaaatatattga |
118 |
Q |
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| T |
39054734 |
tcatcagcaggtgtggccataaggttcctatgtttacatcatgtatattattaattaatagtctttctgagaagctaaagttacaacaaaaatatattga |
39054635 |
T |
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| Q |
119 |
taattttgtcccggtccagtcttttgatacaacaaaaagtcttactttgcttgaaattgaagactaaagttagtttatgaacaacactaacacatctggg |
218 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
39054634 |
taattttgtccccgtccagtcttttgatacaacaaaaagtcttcctttgcttgaaattgaaggctaaagttaatttatgaacaacactaacacatctggg |
39054535 |
T |
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| Q |
219 |
tatgtgagatgtcttttacataataaaccgtgaaggttttgcacaataccccaaaacagacacta |
283 |
Q |
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| T |
39054534 |
tatgtgagatgtcttttacataataaaccgtgaaggttttgcacaataccccaaatcatacacta |
39054470 |
T |
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