View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_high_23 (Length: 331)

Name: NF18856_high_23
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_high_23
NF18856_high_23
[»] chr8 (3 HSPs)
chr8 (11-316)||(14249532-14249837)
chr8 (192-259)||(13310659-13310726)
chr8 (234-318)||(44683256-44683340)
[»] chr1 (1 HSPs)
chr1 (193-316)||(29978919-29979040)
[»] chr5 (2 HSPs)
chr5 (192-316)||(4255233-4255357)
chr5 (217-294)||(1159674-1159751)
[»] chr4 (2 HSPs)
chr4 (207-316)||(47549695-47549804)
chr4 (234-318)||(42112253-42112337)
[»] chr2 (1 HSPs)
chr2 (250-316)||(29297689-29297755)
[»] chr6 (1 HSPs)
chr6 (217-295)||(20793322-20793400)
[»] chr7 (1 HSPs)
chr7 (210-307)||(27505874-27505971)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 14249837 - 14249532
Alignment:
Q  11 cagagatggaaaaatactctttgcgtgacacttaaattagacagagagaatatatggataggaggatgaaactcataaaagaatatattctattaagtta 110  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14249837 cagagatggaaaaatactcttagtgtgacacttaaattagacagagagaatatatggataggaggatgaaactcataaaagaatatcttctattaagtta 14249738  T
Q  111 tgcataatactatatagcatatttgttgcattaattgattcaaaaaagagtactttagtttatatgaaaattttgctgatatcgtgggggaataaattct 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14249737 tgcataatactatatagcatatttgttgcattaattgattcaaaaaggagtactttagtttatatgaaaattttgctaatatcgtgggggaataaattct 14249638  T
Q  211 tgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgccggtgaaggtgtggaggag 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  14249637 tgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttatctttctttcttgagaattccggtgaaggtgtggaggag 14249538  T
Q  311 gttggt 316  Q
    ||||||    
T  14249537 gttggt 14249532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 13310659 - 13310726
Alignment:
Q  192 tcgtgggggaataaattcttgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaat 259  Q
    |||||||| |||||||||| |||||| || || |||||| |||||||||||||| |||||||||||||    
T  13310659 tcgtggggaaataaattctcgagtttcggtggtagaataatgcttcttaattcgatgttgaatgcaat 13310726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 318
Target Start/End: Original strand, 44683256 - 44683340
Alignment:
Q  234 cttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgccggtgaaggtgtggaggaggttggtga 318  Q
    ||||||||  ||||||||||||| |||||||| |||| |||| |||| || |   ||||||| |||||||||| |||| ||||||    
T  44683256 cttcttaacgcggtgttgaatgctattcctattttttatcttgctttttttaagttgccggtaaaggtgtggaagagggtggtga 44683340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 193 - 316
Target Start/End: Complemental strand, 29979040 - 29978919
Alignment:
Q  193 cgtgggggaataaattcttgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgcc 292  Q
    ||||||| ||||||||  ||||||||||||| |||||  | || |||||||||||||||||||| || || || |||| ||| || |||||||||||||     
T  29979040 cgtggggaaataaatt--tgagttttggaggtagaatcattctccttaattcggtgttgaatgctatccccatcttttatctatccttcttgagaatgct 29978943  T
Q  293 ggtgaaggtgtggaggaggttggt 316  Q
    ||||||||||||||||||||||||    
T  29978942 ggtgaaggtgtggaggaggttggt 29978919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 4255357 - 4255233
Alignment:
Q  192 tcgtgggggaataaattcttgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgc 291  Q
    |||||||| ||||| || |||||||||||||| ||||| ||||| ||||||||||||||||| |  |||||||| ||||  || || || || |  ||||    
T  4255357 tcgtggggaaataagtttttgagttttggaggtagaattgtgctccttaattcggtgttgaacgttattcctatcttttacctatccttttttaagatgc 4255258  T
Q  292 cggtgaaggtgtggaggaggttggt 316  Q
    |||||||||||||||||||||||||    
T  4255257 cggtgaaggtgtggaggaggttggt 4255233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 1159674 - 1159751
Alignment:
Q  217 ttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgccgg 294  Q
    |||| ||||||||||| || |||||||| || |||||||  ||||||||||| | ||| |||||||| | ||||||||    
T  1159674 ttggcggaagaatagtcctccttaattccgtcttgaatgtgattcctatattctatctctctttctttaaaatgccgg 1159751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 47549804 - 47549695
Alignment:
Q  207 ttcttgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgccggtgaaggtgtgga 306  Q
    |||||||||||||| || ||||| || ||||| || |||||| | ||||  || || || || | ||||||||| ||||||||| |||||||||||||||    
T  47549804 ttcttgagttttgggggtagaattgttcttctaaactcggtgattaatgtcatcccaattttctatctttcttttttgagaatgtcggtgaaggtgtgga 47549705  T
Q  307 ggaggttggt 316  Q
    ||||||||||    
T  47549704 ggaggttggt 47549695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 42112337 - 42112253
Alignment:
Q  234 cttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgccggtgaaggtgtggaggaggttggtga 318  Q
    ||||||||| ||||||||||||| |||||||  |||| |||| |||| || |   ||||||| |||||||||| |||| ||||||    
T  42112337 cttcttaatgcggtgttgaatgctattcctaatttttatcttgctttttttaagttgccggtaaaggtgtggaagagggtggtga 42112253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 29297689 - 29297755
Alignment:
Q  250 tgaatgcaattcctatattttttctttctttcttgagaatgccggtgaaggtgtggaggaggttggt 316  Q
    |||||||||| || || ||||  || ||||| |||||||||||||||||||||||||||||||||||    
T  29297689 tgaatgcaatgcccattttttacctatcttttttgagaatgccggtgaaggtgtggaggaggttggt 29297755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 20793322 - 20793400
Alignment:
Q  217 ttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgccggt 295  Q
    ||||||| || || || ||||||||||| || ||||||||||||||||| |||| |||||| || || | |||||||||    
T  20793322 ttggagggaggattgttcttcttaattccgttttgaatgcaattcctatcttttatctttcctttttcaaaatgccggt 20793400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 27505874 - 27505971
Alignment:
Q  210 ttgagttttggaggaagaatagtgcttcttaattcggtgttgaatgcaattcctatattttttctttctttcttgagaatgccggtgaaggtgtggag 307  Q
    |||||||| |||||  |||| || ||| | |||||||||||||||||||| || || || |  || || || ||||||||| ||||||||||||||||    
T  27505874 ttgagtttaggaggtcgaattgtccttttgaattcggtgttgaatgcaataccaattttctacctctcctttttgagaatgtcggtgaaggtgtggag 27505971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University