View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_high_28 (Length: 277)

Name: NF18856_high_28
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_high_28
NF18856_high_28
[»] chr4 (30 HSPs)
chr4 (19-259)||(49041534-49041774)
chr4 (20-127)||(48862815-48862922)
chr4 (20-123)||(33134223-33134326)
chr4 (19-123)||(7238116-7238220)
chr4 (14-123)||(7770982-7771091)
chr4 (21-123)||(7789667-7789769)
chr4 (14-114)||(45372448-45372548)
chr4 (20-123)||(33133615-33133718)
chr4 (21-76)||(48735713-48735768)
chr4 (20-114)||(45366618-45366712)
chr4 (20-78)||(48148082-48148140)
chr4 (21-79)||(48875468-48875526)
chr4 (21-76)||(48870167-48870222)
chr4 (21-76)||(48885853-48885908)
chr4 (20-131)||(49044626-49044737)
chr4 (21-73)||(48891037-48891089)
chr4 (21-76)||(48156825-48156880)
chr4 (19-114)||(48902537-48902632)
chr4 (14-76)||(7904657-7904719)
chr4 (20-121)||(48170986-48171087)
chr4 (19-76)||(7774225-7774282)
chr4 (19-120)||(7813061-7813162)
chr4 (19-76)||(7877345-7877402)
chr4 (19-123)||(7822547-7822651)
chr4 (27-111)||(45385191-45385275)
chr4 (15-114)||(7907912-7908011)
chr4 (19-120)||(7800218-7800319)
chr4 (20-76)||(48898347-48898403)
chr4 (19-123)||(50251204-50251308)
chr4 (21-109)||(50668635-50668723)
[»] chr1 (5 HSPs)
chr1 (21-76)||(24322087-24322142)
chr1 (24-121)||(24415417-24415514)
chr1 (19-73)||(24309805-24309859)
chr1 (21-69)||(24366787-24366835)
chr1 (19-73)||(24340042-24340096)
[»] chr8 (6 HSPs)
chr8 (14-76)||(15348487-15348549)
chr8 (14-76)||(12199932-12199994)
chr8 (14-76)||(12444360-12444422)
chr8 (14-114)||(4032307-4032407)
chr8 (19-76)||(12194926-12194983)
chr8 (19-76)||(12439354-12439411)
[»] chr5 (5 HSPs)
chr5 (20-76)||(42562728-42562784)
chr5 (20-76)||(29712866-29712922)
chr5 (21-78)||(178642-178699)
chr5 (24-78)||(29695775-29695829)
chr5 (27-78)||(29687674-29687725)
[»] scaffold0508 (1 HSPs)
scaffold0508 (19-73)||(11890-11944)
[»] chr3 (3 HSPs)
chr3 (14-123)||(11006353-11006462)
chr3 (19-76)||(11024933-11024990)
chr3 (19-76)||(11015921-11015978)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 49041534 - 49041774
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacag 118  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49041534 cagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctcattagaattaggatgatcaattcatgagacag 49041633  T
Q  119 atacattggattcgtcttactctgctatggttatttctcttcttaaaacttaaaagggattcacaaagttatgagagaaacaacaatcccacgcctgcag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49041634 atacattggattcgtcttactctgctatggttatttctcttcttaaaacttaaaagggattcacaaagttatgagagaaacaacaatcccacgcctgcag 49041733  T
Q  219 agatgatatgtagcgacaaccgccacggtgaacacaatgca 259  Q
    ||||||||||||||||||||| | |||||||| ||||||||    
T  49041734 agatgatatgtagcgacaaccacgacggtgaatacaatgca 49041774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 48862922 - 48862815
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || || |  || |||||||||||||||||||||| ||||    
T  48862922 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T
Q  120 tacattgg 127  Q
     |||||||    
T  48862822 aacattgg 48862815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 33134223 - 33134326
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacaga 119  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |  |||||||  ||||| ||||||||||||||||||| ||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcaga 33134322  T
Q  120 taca 123  Q
    ||||    
T  33134323 taca 33134326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 7238116 - 7238220
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacag 118  Q
    ||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||||||| ||| ||||| |||||| ||||||| | |||||||| |||    
T  7238116 cagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttggatgattagttcatgaggcag 7238215  T
Q  119 ataca 123  Q
    |||||    
T  7238216 ataca 7238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 7771091 - 7770982
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatga 113  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| | ||| ||||| |||||| |||| || | |||||||    
T  7771091 aggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatga 7770992  T
Q  114 gacagataca 123  Q
    | ||||||||    
T  7770991 ggcagataca 7770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 7789769 - 7789667
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacagat 120  Q
    ||||||| ||||||||||||||| ||||||||||||||||  |||||||||||||| | ||| ||||| |||||| |||| |||| |||||||| |||||    
T  7789769 gagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagat 7789670  T
Q  121 aca 123  Q
    |||    
T  7789669 aca 7789667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 45372448 - 45372548
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatga 113  Q
    |||| ||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||| | ||| || | ||||||| | || ||||||||||||    
T  45372448 aggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaatttgaatcatcaattcatga 45372547  T
Q  114 g 114  Q
    |    
T  45372548 g 45372548  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 33133718 - 33133615
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacaga 119  Q
    |||||||||||||||||||  ||| |||| | |||||||||||||||||||||||| ||  || || |  ||||| ||||||||||||||||||| ||||    
T  33133718 agagataagagaaaaccaaagcttacaaatgaatttgaaacgaataagagacttcattggtaaccttagcagaataaggatgatcaattcatgaggcaga 33133619  T
Q  120 taca 123  Q
    ||||    
T  33133618 taca 33133615  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 48735713 - 48735768
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcac 48735768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 45366618 - 45366712
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgag 114  Q
    ||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||  || || | ||| ||| |||| |||||||||||||    
T  45366618 agagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgag 45366712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 48148082 - 48148140
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactg 78  Q
    |||||||||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  48148082 agagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactg 48148140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 48875526 - 48875468
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactga 79  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  48875526 gagatgagagaaaaccaagacttgcaaacgcatttgaaacgaattagagacttgactga 48875468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 48870222 - 48870167
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcac 48870167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 48885908 - 48885853
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcac 48885853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 49044626 - 49044737
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacaga 119  Q
    ||||||||||||||||||  |||| ||||| || |||||||| | ||||||| |||||| ||| ||||  ||||| ||||||||||| ||||||| ||||    
T  49044626 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcaga 49044725  T
Q  120 tacattggattc 131  Q
    |||  |||||||    
T  49044726 tacggtggattc 49044737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 48891089 - 48891037
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagactt 73  Q
    |||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  48891089 gagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactt 48891037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 48156825 - 48156880
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcac 48156880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 48902632 - 48902537
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgag 114  Q
    |||| |||||||||||||||||||| ||||| |||||||||||||| |||||||| || | ||| | |   | |||| ||||||||||||||||||    
T  48902632 cagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgag 48902537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 7904719 - 7904657
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    |||| |||||||||||||||||||  |||| ||||| ||||||||||| ||||||||||||||    
T  7904719 aggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 48170986 - 48171087
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacaga 119  Q
    ||||||||||| |||||||||||| ||||| ||||||||||| | |||||||||||| || || ||||  |||||| | |  ||||||||| ||| ||||    
T  48170986 agagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattcaagagccaga 48171085  T
Q  120 ta 121  Q
    ||    
T  48171086 ta 48171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 7774225 - 7774282
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    |||||||||||||||||||   ||| ||||| ||||||||| ||||||||||||||||    
T  7774225 cagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcac 7774282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 7813162 - 7813061
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacag 118  Q
    ||||||||||||||||||| || || ||||| || |||||||| |||||| ||||||| | ||| ||||  |  |||||||| ||||| ||||||| |||    
T  7813162 cagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcag 7813063  T
Q  119 at 120  Q
    ||    
T  7813062 at 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 7877402 - 7877345
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    |||||||||||||||||||   ||| |||| |||||||||||| ||||||||||||||    
T  7877402 cagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcac 7877345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 7822651 - 7822547
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacag 118  Q
    ||||||||||||||||||| || || ||||| || |||||||| |||||| ||||||| | ||| ||||  |  |||||||| ||||| | ||||| |||    
T  7822651 cagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatgatgaggcag 7822552  T
Q  119 ataca 123  Q
    |||||    
T  7822551 ataca 7822547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 45385191 - 45385275
Alignment:
Q  27 agagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcat 111  Q
    ||||||||||||||||| |||||| |||||||||| || |||||||| ||||  || || | ||| ||| |||| ||||||||||    
T  45385191 agagaaaaccaagacttacaaacggatttgaaacgtatgagagacttaactggtaaccttagtaggatttggatcatcaattcat 45385275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 7908011 - 7907912
Alignment:
Q  15 ggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgag 114  Q
    ||||||||||||||||||||||| ||||| | |||  | ||||||||  ||||||||||||| | ||| |||| ||| ||  |||  |||||||||||||    
T  7908011 ggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgag 7907912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 7800319 - 7800218
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacag 118  Q
    |||||| |||||||||||| || || ||||| || |||||||| |||||| ||||||| | ||| ||||  |  |||||||| ||||| ||||||| |||    
T  7800319 cagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcag 7800220  T
Q  119 at 120  Q
    ||    
T  7800219 at 7800218  T

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Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 48898403 - 48898347
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||| || ||||||||||| ||||| || ||||||||  |||||||||||||    
T  48898403 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcac 48898347  T

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Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 50251204 - 50251308
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacag 118  Q
    |||||||||||||||||||||||||  |||| || || ||  | ||||||| |||||||| ||| || | || |||| |  |||||||||| |||| |||    
T  50251204 cagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgaggcag 50251303  T
Q  119 ataca 123  Q
    |||||    
T  50251304 ataca 50251308  T

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Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 50668723 - 50668635
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattc 109  Q
    ||||| |||||||||||||| || |||||||| |||||||| |||||| | ||||| | ||| ||||  | |||| | |||||||||||    
T  50668723 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattc 50668635  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24322142 - 24322087
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcac 24322087  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 24415514 - 24415417
Alignment:
Q  24 ataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatgagacagata 121  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||| || |  ||||||| ||| ||| || |||||||||||| || ||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagata 24415417  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 24309859 - 24309805
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagactt 73  Q
    |||||||||||||||||||  |||| |||||| ||||||||||||||||||||||    
T  24309859 cagagataagagaaaaccataacttacaaacggatttgaaacgaataagagactt 24309805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 24366835 - 24366787
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagag 69  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  24366835 gagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagag 24366787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 24340096 - 24340042
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagactt 73  Q
    |||||||||| |||||||| ||||| |||||  ||||||||||||||||||||||    
T  24340096 cagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagactt 24340042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 15348549 - 15348487
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  15348549 aggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcac 15348487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 12199994 - 12199932
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    |||| ||||||||||||||||||| ||||| ||||| ||||||||||  | ||||||||||||    
T  12199994 aggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcac 12199932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 12444422 - 12444360
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    |||| ||||||||||||||||||| ||||| ||||| ||||||||||  | ||||||||||||    
T  12444422 aggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcac 12444360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 4032307 - 4032407
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatga 113  Q
    |||| |||| |||||||  |||||||| || ||||| || |||||||| ||||||||||||| ||  | ||||| ||  ||| |||||||||||||||||    
T  4032307 aggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctcagtaagatttggatgatcaattcatga 4032406  T
Q  114 g 114  Q
    |    
T  4032407 g 4032407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 12194983 - 12194926
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||| ||||| ||||| |||| |||||||||||  | ||||||||||||    
T  12194983 cagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcac 12194926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 12439411 - 12439354
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||| ||||| ||||| |||| |||||||||||  | ||||||||||||    
T  12439411 cagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcac 12439354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 42562728 - 42562784
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcac 42562784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 29712866 - 29712922
Alignment:
Q  20 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||||||||  |||| |||||||| |||||||||||||||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcac 29712922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 178699 - 178642
Alignment:
Q  21 gagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactg 78  Q
    ||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactg 178642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 29695829 - 29695775
Alignment:
Q  24 ataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactg 78  Q
    |||||||| |||||  |||| ||||||||||||||||||||||||||||| ||||    
T  29695829 ataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactg 29695775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 29687725 - 29687674
Alignment:
Q  27 agagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactg 78  Q
    ||||||||||||||||| ||||| || ||||| || ||||||||||||||||    
T  29687725 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactg 29687674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 11944 - 11890
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagactt 73  Q
    ||||||||||||||||||| ||||| |||||| |||||||||| |||||||||||    
T  11944 cagagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 11890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 11006353 - 11006462
Alignment:
Q  14 aggagcagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcactgacaatctcattagaattaggatgatcaattcatga 113  Q
    |||| ||||||||||||  ||||| ||||| ||||| || |||||||| ||||| |||||||| | ||| ||||  |  ||| | |||||||||||||||    
T  11006353 aggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatga 11006452  T
Q  114 gacagataca 123  Q
    | ||||||||    
T  11006453 ggcagataca 11006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 11024933 - 11024990
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||  ||||| ||||| ||||||||||||||||| || |||||||||||    
T  11024933 cagagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcac 11024990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 11015921 - 11015978
Alignment:
Q  19 cagagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcac 76  Q
    ||||||||||||  ||| | ||||| ||||||||||||||||| || |||||||||||    
T  11015921 cagagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcac 11015978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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