View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18856_high_38 (Length: 217)
Name: NF18856_high_38
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_high_38 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 2017244 - 2017059
Alignment:
| Q |
20 |
gttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatatcg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017244 |
gttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacaccacgggatgtttggctttgtgcaacaggtttaatgatatcg |
2017145 |
T |
|
| Q |
120 |
tggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgctact |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2017144 |
tggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtcatttgttcgagaaagtgtcctttgttact |
2017059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 40566428 - 40566586
Alignment:
| Q |
18 |
cagttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatat |
117 |
Q |
| |
|
||||||||||||||||||||| | |||| | || |||||| |||||||||||||||||| || |||||| ||||||| ||||||||| || ||||||| |
|
|
| T |
40566428 |
cagttggctgtgacacgattggagcactctcggcgattgattctgggggaaacaactacaccacaggatgtgtggctttatgcaacaggcttgatgatat |
40566527 |
T |
|
| Q |
118 |
cgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtc |
176 |
Q |
| |
|
|||||| | |||||||||| || ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
40566528 |
tatggccagtcaatcttgctcaggtactggttgttgcgagatttcaataccccaaggtc |
40566586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 40595808 - 40595958
Alignment:
| Q |
18 |
cagttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatat |
117 |
Q |
| |
|
||||||| |||||||| || | | |||||| |||| |||||| | ||||||| ||||| || | |||| |||| |||||||||||| ||| |||||| |
|
|
| T |
40595808 |
cagttggatgtgacacaatgggactactcgaagcaattgattctaaaggaaacacatacaccactgcatgtgtggccttgtgcaacaggcttagtgatat |
40595907 |
T |
|
| Q |
118 |
cgtggccaatgaatcttgctccggcactggttgttgtcagatttcaatacc |
168 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||| ||||||||||||| |
|
|
| T |
40595908 |
tgtggccaatgaatcttgttccggcccaggttgttgtgagatttcaatacc |
40595958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 40589404 - 40589562
Alignment:
| Q |
18 |
cagttggctgtgacacgattgcaatactcgcagcatttgattttgggggaaacaactacacgacgggatgtttggctttgtgcaacaggtttaatgatat |
117 |
Q |
| |
|
||||||||||||| || || |||||||| || | |||||| || |||||||||||||| | ||||||||||||| |||||||||| |||| | |
|
|
| T |
40589404 |
cagttggctgtgatacatctggaatactcggagtaattgattctgaaggaaacaactacacctctggatgtttggcttggtgcaacaggcacgctgatct |
40589503 |
T |
|
| Q |
118 |
cgtggccaatgaatcttgctccggcactggttgttgtcagatttcaataccgcaaggtc |
176 |
Q |
| |
|
||| |||||||| ||||| || || |||||||||| |||||||| |||| ||||||| |
|
|
| T |
40589504 |
cgttgccaatgagtcttgttctggtcctggttgttgccagatttcggtaccccaaggtc |
40589562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University