View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_high_42 (Length: 209)
Name: NF18856_high_42
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_high_42 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 22682090 - 22682272
Alignment:
| Q |
13 |
cactaaaaatagaagaatatttgaagtagttaataaattataaacaaaagtagaaaggtcaaagacatagaagttaaagaacatgtgacctgctacactg |
112 |
Q |
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| T |
22682090 |
cactaaaaaaggaagaatatttgaagtagttaataaatcataaacaaaagtagaaaggtcaaatacatagaagttaaagaacatgtgacctgctacactg |
22682189 |
T |
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| Q |
113 |
ttggcaaaacctttgctccaaaccagaaacaacaacagaaggagattttgaatgcatgcaacaaactttatgtctagaataat |
195 |
Q |
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| T |
22682190 |
ttggcaaaacctttgctccaaaccagaaacaacaacagaaggagattttgaatgcatgcaacaaactttatgtctagaataat |
22682272 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 36896752 - 36896846
Alignment:
| Q |
99 |
gacctgctacactgttggcaaaacctttgctccaaaccagaaacaacaacagaaggagattttgaatgcatgcaacaaactttatgtctagaata |
193 |
Q |
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| T |
36896752 |
gacctgctacattgttgacaaaacctttgttgaagaccagaaacagtaacagtaggggatttagagtgcatgctacaaactttgtgtctagaata |
36896846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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