View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_high_7 (Length: 539)

Name: NF18856_high_7
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_high_7
NF18856_high_7
[»] chr5 (5 HSPs)
chr5 (14-288)||(33807942-33808214)
chr5 (14-288)||(33811596-33811868)
chr5 (14-288)||(33816514-33816786)
chr5 (109-204)||(16698504-16698601)
chr5 (109-204)||(22763905-22764002)
[»] chr6 (5 HSPs)
chr6 (19-287)||(31151926-31152195)
chr6 (28-211)||(1111378-1111564)
chr6 (90-287)||(22981504-22981710)
chr6 (90-204)||(23806787-23806904)
chr6 (222-287)||(23806698-23806761)
[»] chr3 (9 HSPs)
chr3 (24-287)||(50603138-50603403)
chr3 (37-287)||(54967210-54967477)
chr3 (90-287)||(44782524-44782733)
chr3 (37-204)||(39298736-39298908)
chr3 (90-206)||(18556392-18556511)
chr3 (31-135)||(31725346-31725448)
chr3 (90-204)||(54979933-54980051)
chr3 (109-208)||(17645800-17645897)
chr3 (222-269)||(54979860-54979905)
[»] chr8 (6 HSPs)
chr8 (287-523)||(40806193-40806417)
chr8 (37-287)||(41481548-41481815)
chr8 (37-287)||(36167547-36167813)
chr8 (93-282)||(18951129-18951326)
chr8 (336-404)||(40818218-40818285)
chr8 (331-386)||(40826643-40826698)
[»] scaffold0559 (2 HSPs)
scaffold0559 (287-523)||(8218-8449)
scaffold0559 (331-386)||(4213-4268)
[»] chr1 (2 HSPs)
chr1 (72-287)||(29706854-29707069)
chr1 (112-204)||(27642132-27642225)
[»] scaffold0045 (1 HSPs)
scaffold0045 (37-269)||(26516-26752)
[»] chr7 (10 HSPs)
chr7 (90-288)||(4842647-4842857)
chr7 (37-287)||(25857131-25857395)
chr7 (37-287)||(4835575-4835840)
chr7 (90-206)||(13465046-13465165)
chr7 (27-196)||(8252686-8252853)
chr7 (109-204)||(27341025-27341120)
chr7 (92-213)||(17845847-17845969)
chr7 (90-204)||(24379370-24379487)
chr7 (237-287)||(24380113-24380163)
chr7 (138-204)||(38994151-38994218)
[»] chr4 (3 HSPs)
chr4 (37-288)||(9757211-9757480)
chr4 (109-206)||(37286972-37287069)
chr4 (92-204)||(42682924-42683038)
[»] scaffold0479 (1 HSPs)
scaffold0479 (90-287)||(2727-2936)
[»] chr2 (2 HSPs)
chr2 (109-202)||(37037942-37038035)
chr2 (235-269)||(37038074-37038108)
[»] scaffold0003 (1 HSPs)
scaffold0003 (109-288)||(342216-342404)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 33807942 - 33808214
Alignment:
Q  14 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33807942 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33808041  T
Q  114 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33808042 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33808139  T
Q  214 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacag 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  33808140 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacag 33808214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 33811596 - 33811868
Alignment:
Q  14 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811596 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33811695  T
Q  114 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33811696 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33811793  T
Q  214 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacag 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  33811794 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacag 33811868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 33816514 - 33816786
Alignment:
Q  14 tcatcagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816514 tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta 33816613  T
Q  114 ttcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgt 213  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  33816614 ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt--tgt 33816711  T
Q  214 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacag 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  33816712 gtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacag 33816786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
Q  109 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||||||||||| ||||||||||| | |||||||||   | ||||||| |  ||||||| || ||||||||||||||| ||||||| ||||||||    
T  16698504 ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt 16698601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
Q  109 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||||||||||| |||||||   | | ||||||||||  |  ||||||||||||||||| || |||| ||||||||||||||||| |||||||||    
T  22764002 ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt 22763905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 31152195 - 31151926
Alignment:
Q  19 agagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattccc 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||    
T  31152195 agagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgtattccc 31152096  T
Q  119 attattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtca 217  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  31152095 attattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgtgtgtca 31151996  T
Q  218 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    ||||| ||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||||||||    
T  31151995 ttttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca 31151926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
Q  28 gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta 125  Q
    ||||||||||||  || |||||||||||||  | ||||||  |||||||||||||||||||||||  || | ||||||||  ||||||||| ||||||||    
T  1111564 gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta 1111465  T
Q  126 ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt 211  Q
    ||||  | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || |||||||||||||||    
T  1111464 ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt 1111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  22981504 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 22981603  T
Q  187 gttttccacgctaaaattttgttgtgtg-------tcatttt--acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggca 277  Q
    |||||||||||||||||| | | ||||        | |||||  ||||||||||||  |||||| ||||||||||||||||| ||||||||| || | ||    
T  22981604 gttttccacgctaaaattctct-gtgtcattacgcttatttttcacgtttccgcta--gtgcctgttttgagttcacggaggggggaaattatgcagtca 22981700  T
Q  278 tttcccaaca 287  Q
    ||||||||||    
T  22981701 tttcccaaca 22981710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 23806904 - 23806787
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | |||||||||||||||||| || ||||||||||||||    
T  23806904 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag 23806805  T
Q  187 gttttccacgctaaaatt 204  Q
    ||||||||||||||||||    
T  23806804 gttttccacgctaaaatt 23806787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 23806761 - 23806698
Alignment:
Q  222 acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    ||||||||||||  |||||| ||||||||||||||||| ||||||||| || | ||||||||||||    
T  23806761 acgtttccgcta--gtgcctgttttgagttcacggaggggggaaattatgcagtcatttcccaaca 23806698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 50603138 - 50603403
Alignment:
Q  24 gtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccatt 121  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||    
T  50603138 gtgagagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatagttaggtccatctaaaggtgaagatttgtattcccatt 50603237  T
Q  122 attattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcatttt 221  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50603238 attattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgagaaggttttccacgctaaaattttattgtgtgtcatttt 50603337  T
Q  222 acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||   ||||||||||||||||    
T  50603338 acgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttcccaaca 50603403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 54967477 - 54967210
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  54967477 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 54967378  T
Q  131 gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 216  Q
    |||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || ||||||               
T  54967377 gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctttt 54967279  T
Q  217 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    |||| |||||||||||  ||||||||||||||||| ||||||||||||||||| || ||||||||||||||    
T  54967278 atttcacgtttccgct--agtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaaca 54967210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 287
Target Start/End: Complemental strand, 44782733 - 44782524
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | ||||||||||||||||  |||| |||| ||||||||    
T  44782733 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa 44782634  T
Q  186 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctg 274  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| |||||||||||||||||||||||||||||| || |    
T  44782633 ggttttccacgctaaaattctctt-tgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcag 44782537  T
Q  275 gcatttcccaaca 287  Q
    |||||||||||||    
T  44782536 gcatttcccaaca 44782524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    ||||||||||||||||||||||| ||   |||||||||||| | |||     ||||| ||||||| ||||||||| | |||||||||| |||| ||||||    
T  39298736 atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata 39298834  T
Q  131 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 204  Q
    |||||  ||||||||||  | |||||||||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  39298835 gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt 39298908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag 186  Q
    ||||||| ||||||||| | |||||||| |||| | |||||||||||  |||||||||||   ||||||||||||||||  |||| |||| |||||||||    
T  18556511 tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag 18556412  T
Q  187 gttttccacgctaaaatttt 206  Q
    ||||||||||||||||||||    
T  18556411 gttttccacgctaaaatttt 18556392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
Q  31 aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata 130  Q
    ||||||||||| |  |||||||||||| ||||  |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| |||||    
T  31725448 aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata 31725351  T
Q  131 gtgga 135  Q
     ||||    
T  31725350 ttgga 31725346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 54980051 - 54979933
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||||||||| |||||||||||  |||  |||||||  | |||||||||||||||||| || |||| ||||||||    
T  54980051 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa 54979952  T
Q  186 ggttttccacgctaaaatt 204  Q
    ||||||||| |||||||||    
T  54979951 ggttttccatgctaaaatt 54979933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt 208  Q
    |||||||  |||||| |||||||||||  ||||||| ||| | | ||||||||||||||  ||  | | |||||||||||||||||||||||||||||||    
T  17645800 ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt 17645897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 54979905 - 54979860
Alignment:
Q  222 acgtttccgctaaagtgcctattttgagttcacggaggagggaaatta 269  Q
    ||||||||||||  |||| ||||||||||| |||||||||||||||||    
T  54979905 acgtttccgcta--gtgcttattttgagttgacggaggagggaaatta 54979860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 6e-97; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 287 - 523
Target Start/End: Complemental strand, 40806417 - 40806193
Alignment:
Q  287 agcagcttcctactatacatcagtaattttgagattaaataatgtaatgatatgaagacggataagtgttcaatccacataaaacatgacggtaacatcc 386  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40806417 agcagcttcctactatacagcagtaattttgagattaaataatgtaatgatatgaagacggataagtgttcaatccacataaaacatgacggtaacatcc 40806318  T
Q  387 gttaaggtttttaaactttgaattaaatttttactatggtatagaaactatcaatgtggtatgttacaagtagtagatctttgagttttttaatcatttg 486  Q
     ||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40806317 attaaggtttttaaa------------tttttactatggtatagaaactatcaatgtggtatgttacaagtagtagatctttgagtcttttaatcatttg 40806230  T
Q  487 gtcataagttcgatctctagtggttgtatgtgaaaaa 523  Q
    |||||||||||||||||||||||||| ||||||||||    
T  40806229 gtcataagttcgatctctagtggttgcatgtgaaaaa 40806193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 37 - 287
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  41481548 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata 41481647  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 216  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||               
T  41481648 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 41481746  T
Q  217 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    |||| |||||||||||  |||| |||||||||||||||||||||||||||||| || ||||||||||||||    
T  41481747 atttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 41481815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 37 - 287
Target Start/End: Original strand, 36167547 - 36167813
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  36167547 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 36167646  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc----------- 216  Q
    ||||| | ||||||||||  | |||||| |||||||||  |||| |||| ||||||||||||||||||||||||||| | || ||||||               
T  36167647 gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctt-tgtgtcattacgtttat 36167744  T
Q  217 attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  36167745 atttcacgtttccgct--agtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca 36167813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 282
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
Q  93 acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt 188  Q
    |||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| ||  |  |||| ||||||||||  |||| ||||||||||||||||    
T  18951326 acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt 18951227  T
Q  189 tttccacgctaaaattttgttgtgtgtc------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcc 282  Q
    |||||| ||||||||| |||    |  |      |||| | |||||||||  |||||||||||||||||||||||||||| |||||| || |||||||||    
T  18951226 tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc 18951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 40818285 - 40818218
Alignment:
Q  336 atatgaagacggataagtgttcaatccacataaaacatgacggtaacatccgttaaggtttttaaactt 404  Q
    ||||||||||||||| ||| || ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  40818285 atatgaagacggata-gtgctcgatccacataaagcatgaccgtaacatccattaaggtttttaaactt 40818218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 40826698 - 40826643
Alignment:
Q  331 taatgatatgaagacggataagtgttcaatccacataaaacatgacggtaacatcc 386  Q
    |||||||||||||| |||| |||| |||||| ||||||| |||||| |||||||||    
T  40826698 taatgatatgaagatggattagtgctcaatctacataaaccatgactgtaacatcc 40826643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 287 - 523
Target Start/End: Original strand, 8218 - 8449
Alignment:
Q  287 agcagcttcctactatacatcagtaattttgagattaaataatgtaatgatatgaagacggataa-gtgttcaa-tccacataaaa--catgacggtaa- 381  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||     
T  8218 agcagcttcctactatacagcagtaattttgagattaaataatgtaatgatatgaagacggataaagtgttcaaatccacataaaaaacatgacggtaaa 8317  T
Q  382 catccgtt--aaggtttttaaactttgaattaaatttttactatggtatagaaactatcaatgtggtatgttacaagtagtagatctttgagt-ttttta 478  Q
    |||||  |  ||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8318 catccaattaaaggtttttaaa-------------ttttactatggtatagaaactatcaatgtggtatgttacaagtagtagatctttgagtcttttta 8404  T
Q  479 atcatttggtcataagttcgatctctagtggttgtatgtgaaaaa 523  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  8405 atcatttggtcataagttcgatctctagtggttgcatgtgaaaaa 8449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 386
Target Start/End: Complemental strand, 4268 - 4213
Alignment:
Q  331 taatgatatgaagacggataagtgttcaatccacataaaacatgacggtaacatcc 386  Q
    |||||||||||||| |||| |||| |||||| ||||||| |||||| |||||||||    
T  4268 taatgatatgaagatggattagtgctcaatctacataaaccatgactgtaacatcc 4213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 72 - 287
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
Q  72 ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt 171  Q
    |||||||||||||||||||||||| |||||||||||||| |  | ||||||||||||||||||||||||||||||  || | |||||||| || ||||||    
T  29707069 ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt 29706970  T
Q  172 actcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag 271  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||||||| |||  |||||||||| |||||| |||||||||| ||| ||||||| |    
T  29706969 actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg 29706870  T
Q  272 ctggcatttcccaaca 287  Q
      ||||||| ||||||    
T  29706869 gaggcattttccaaca 29706854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
Q  112 tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||||||||||||||||||||  |||||||| |    ||  |||||| ||||| |||| ||||||||||||||||||| ||||| ||||||    
T  27642132 tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt 27642225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 37 - 269
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |     |||| || ||||||| |||||| || | |||||||| | |||| |||| |    
T  26752 atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga 26653  T
Q  131 gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtcattttacgtttccg 230  Q
    |||||  ||||||||||  | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||  |||| ||||||||||| ||    
T  26652 gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgtt--gtgttattttacgttttcg 26555  T
Q  231 ctaaagtgcctattttgagttcacggaggagggaaatta 269  Q
    |||||||| |||||||||||||||| |||||||| ||||    
T  26554 ctaaagtgtctattttgagttcacgaaggagggagatta 26516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 90 - 288
Target Start/End: Complemental strand, 4842857 - 4842647
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  | |||||| |||||||||  |||| |||||||||||||    
T  4842857 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa 4842758  T
Q  186 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctg 274  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  ||||||||||||||||||||||||||||||||||| || |    
T  4842757 ggttttccacgctaaaattctctt-tgtgtcattacacttatatttcacgtttccgct--agtgcctattttgagttcacggaggagggaaattatgcag 4842661  T
Q  275 gcatttcccaacag 288  Q
    ||||||||||||||    
T  4842660 gcatttcccaacag 4842647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 25857395 - 25857131
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   ||||||||  |||||| ||   ||| || ||||||| | ||||||| | ||||||||||||||| ||||||    
T  25857395 atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata 25857296  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgttgtgtgtc-----------a 217  Q
    ||||| | ||||||||||  | ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    | ||||||           |    
T  25857295 gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaatt---ctctgtgtcattacgcttata 25857199  T
Q  218 ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    ||| |||||||||||  |||||||||||| |||||||||||||||||||||| || ||||||||||||||    
T  25857198 tttcacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaaca 25857131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||| ||||||||||| ||||||    
T  4835840 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata 4835741  T
Q  131 gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgt------gtgt-catt 219  Q
    ||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||||||||||||||||||||| | | |||      || |  |||    
T  4835740 gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgtttatatt 4835641  T
Q  220 ttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    | |||||||| ||  ||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  4835640 tcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca 4835575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||| | ||||||||||  | |||||| ||||||||||| || ||||||||||||||    
T  13465165 tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag 13465066  T
Q  187 gttttccacgctaaaatttt 206  Q
    ||||||||||||||||||||    
T  13465065 gttttccacgctaaaatttt 13465046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
Q  27 agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta 122  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    || ||| ||||| || | | ||||| ||||||||||| |||    
T  8252853 agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta 8252754  T
Q  123 ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg 196  Q
    |||||| | ||  || ||||||| |||||| ||||||      | |||||||||| ||||||||||||||||||    
T  8252753 ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg 8252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt 204  Q
    ||||||| ||||||| ||| |||| ||  |||||||||   | |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27341120 ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt 27341025  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 17845847 - 17845969
Alignment:
Q  92 cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt 190  Q
    ||||| ||||||||| | ||||||| ||||||| |||||||||||  |||||||||   |  ||||| ||||||||||||| ||||||||| ||||||||    
T  17845847 cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt 17845946  T
Q  191 tccacgctaaaattttgttgtgt 213  Q
    ||||| |||||||| | ||||||    
T  17845947 tccactctaaaattctcttgtgt 17845969  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 204
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag 186  Q
    ||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||  |  | ||||||||||||||| || ||||||||||||||    
T  24379487 tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag 24379388  T
Q  187 gttttccacgctaaaatt 204  Q
    |||||||||| |||||||    
T  24379387 gttttccacgttaaaatt 24379370  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 287
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
Q  237 tgcctattttgagttcacggaggagggaaattaagctggcatttcccaaca 287  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||    
T  24380113 tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca 24380163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
Q  138 tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt 204  Q
    |||||||||||   |||||||||||||||||| || ||| |||||||||||||||||||| |||||||    
T  38994218 tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt 38994151  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 9757480 - 9757211
Alignment:
Q  37 atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata 130  Q
    |||||||||||||||||||||||  |   |||||||||||| | |||     || || ||||||| ||||||||| | ||||||||||||||| ||||||    
T  9757480 atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata 9757381  T
Q  131 gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaattttgttgtgtgtc---------- 216  Q
    |||||     ||||||||||  | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || ||||||              
T  9757380 gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctt-tgtgtcattacgctta 9757282  T
Q  217 -attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacag 288  Q
     |||| |||||||||||  |||||||||||||||||||||||||| |||||||| || ||||||| |||||||    
T  9757281 tatttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaacag 9757211  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt 206  Q
    ||||||||  |||||||||||||||||  ||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  37287069 ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt 37286972  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
Q  92 cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt 189  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||   | |||||||||| ||||||||| |||||||||||||||||    
T  42683038 cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt 42682939  T
Q  190 ttccacgctaaaatt 204  Q
    ||||||||| |||||    
T  42682938 ttccacgctgaaatt 42682924  T

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Target: scaffold0479 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 90 - 287
Target Start/End: Original strand, 2727 - 2936
Alignment:
Q  90 tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa 185  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||  | ||||||||||||||||  |||| |||||||||||||    
T  2727 tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa 2826  T
Q  186 ggttttccacgctaaaattttgttgtgtgtc-----------attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctg 274  Q
    ||||||||||||||||||| | || ||||||           |||| |||||||||||  |||| ||||||||||||||||||| |||||||||| ||      
T  2827 ggttttccacgctaaaattctctt-tgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcat 2923  T
Q  275 gcatttcccaaca 287  Q
    |||||||||||||    
T  2924 gcatttcccaaca 2936  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
Q  109 ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa 202  Q
    |||||||| ||||||  |||||||| |  ||||||||||  | |||||||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  37037942 ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa 37038035  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
Q  235 agtgcctattttgagttcacggaggagggaaatta 269  Q
    ||||||||||||||||||||||||||| |||||||    
T  37038074 agtgcctattttgagttcacggaggagagaaatta 37038108  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 288
Target Start/End: Complemental strand, 342404 - 342216
Alignment:
Q  109 ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt 205  Q
    ||||||||||||||| ||||||||||| | ||||||||||  | || ||||||||||| |||| || |||| |||||||||||||| ||||||||||||     
T  342404 ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc 342305  T
Q  206 tgttgtg---------tgtcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagctggcatttcccaacag 288  Q
    | |||||         |   |||| ||||||| |||  |||||||||||||||||||||||||||| |||||| || ||||||| |||||||    
T  342304 t-ttgtgtcattacgcttatatttcacgtttctgct--agtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaacag 342216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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