View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18856_high_8 (Length: 502)
Name: NF18856_high_8
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 32845196 - 32845567
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32845196 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32845295 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32845296 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32845395 |
T |
|
| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatgtagtgtcatccaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
300 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32845396 |
cataccatagcgatgaagaagattggtttccaaacctatgtagtgtcatcaaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
32845495 |
T |
|
| Q |
301 |
tctaatcactcccttccctgaacaaggtaataagaaatgttgtatcacagtcttaaaatcaggcacatatat |
372 |
Q |
| |
|
||||||||||||| |||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32845496 |
tctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatat |
32845567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 32831915 - 32832286
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32831915 |
acaagtgtaaaattatcaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggtctattacac |
32832014 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32832015 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
32832114 |
T |
|
| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatgtagtgtcatccaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
300 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32832115 |
cataccatagcgatgaagaagattggtttccaaacctatgtagtgtcatcaaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
32832214 |
T |
|
| Q |
301 |
tctaatcactcccttccctgaacaaggtaataagaaatgttgtatcacagtcttaaaatcaggcacatatat |
372 |
Q |
| |
|
||||||||||||| |||||| | |||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32832215 |
tctaatcactcccctccctggagaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatat |
32832286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 17932728 - 17932357
Alignment:
| Q |
1 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17932728 |
acaagtgtaaaattattaattgaaagttgatattgggtattgatggatgcaatcagaccatggtcccttattagactctccaagttttggactattacac |
17932629 |
T |
|
| Q |
101 |
ttcaaaactacactgcaacacttagtcccacttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
200 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17932628 |
ttcaaaaatacactgcaacacttaaacccacttccaattccaagtagccaaatgttgtcacctttctgcactttttccttggcttccaagtaagcaagtt |
17932529 |
T |
|
| Q |
201 |
catacaatagtgatgaagaagattggtttccaaacctatgtagtgtcatccaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
300 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17932528 |
cataccatagagatgaagaagattggtttccaaacctatgtagtgtcatcaaagcagcttccatatctctctcaccaagtttcaacctttttcctacccc |
17932429 |
T |
|
| Q |
301 |
tctaatcactcccttccctgaacaaggtaataagaaatgttgtatcacagtcttaaaatcaggcacatatat |
372 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17932428 |
tctaatcactcccctccctggacaaggcaatatgaaatgttgtatcacagtcttaaaatcaggcacatatat |
17932357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 372 - 485
Target Start/End: Complemental strand, 17943781 - 17943668
Alignment:
| Q |
372 |
tgcccgtattcttgccagtaattaatagcggaaagacggtctttccacccttttttgtgcaaacattggtaaattcctgaaaaatgttttctgtgcaatt |
471 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17943781 |
tgcccgtatttttgccagtaattaatagcggaaagacggtctttccacccttttttgtgcaaacattggtaaattcctgaaaaatgttttctgtgcaatt |
17943682 |
T |
|
| Q |
472 |
ttgatttttgatta |
485 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17943681 |
ttgatttttgatta |
17943668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 30 - 369
Target Start/End: Complemental strand, 46189227 - 46188888
Alignment:
| Q |
30 |
atattgggtattgatggatgcagtcagaccatggtcccttattagactctccaaattttggtctattacacttcaaaactacactgcaacacttagtccc |
129 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||| |||||| |||| | |||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
46189227 |
atattgggtattgatgaatgcaatcaccccatggtcccttatgagactcaccaagtattggtctattacacttcaaaacaacactgcaacacttggtccc |
46189128 |
T |
|
| Q |
130 |
acttccaattccaagtagccaaatattgtcacctttctgcactttttccttggcttccaagtaagcaagttcatacaatagtgatgaagaagattggttt |
229 |
Q |
| |
|
|||||| ||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||| |
|
|
| T |
46189127 |
acttcccattccaacttgccaaacattatcacctttcttcactttttccttggcttccaagtaagcaagttcataccacaatgatgaagaagattgattt |
46189028 |
T |
|
| Q |
230 |
ccaaacctatgtagtgtcatccaagcagcttccatatctctctcaccaagtttcaacctttttcctacccctctaatcactcccttccctgaacaaggta |
329 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||| || ||| |||||||||| ||||||| |||||| || |||| ||||| ||| |||||||||| || | |
|
|
| T |
46189027 |
ccaaacctatgaagtgtcatcaaagcaggttcaatctctttctcaccaagcttcaacccttttcccacttctcttatcacacccctccctgaacatggca |
46188928 |
T |
|
| Q |
330 |
ataagaaatgttgtatcacagtcttaaaatcaggcacata |
369 |
Q |
| |
|
| | ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46188927 |
aacaaaaatgttgtataacagtcttaaaatcaggcacata |
46188888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University