View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_high_9 (Length: 467)

Name: NF18856_high_9
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_high_9
NF18856_high_9
[»] chr3 (18 HSPs)
chr3 (267-453)||(8236546-8236726)
chr3 (45-198)||(16386496-16386649)
chr3 (50-198)||(24842820-24842968)
chr3 (41-198)||(22895397-22895554)
chr3 (44-127)||(15791833-15791916)
chr3 (41-197)||(22896382-22896538)
chr3 (50-198)||(24844095-24844244)
chr3 (41-198)||(54204345-54204501)
chr3 (41-127)||(4843398-4843484)
chr3 (41-127)||(4869093-4869179)
chr3 (41-127)||(28556912-28556998)
chr3 (49-112)||(23545434-23545497)
chr3 (50-127)||(15093623-15093700)
chr3 (49-127)||(23539334-23539412)
chr3 (50-127)||(46596165-46596242)
chr3 (49-118)||(22257243-22257312)
chr3 (50-118)||(38842197-38842265)
chr3 (39-127)||(46597407-46597495)
[»] scaffold0497 (2 HSPs)
scaffold0497 (41-198)||(1450-1607)
scaffold0497 (41-192)||(304-456)
[»] chr7 (21 HSPs)
chr7 (44-198)||(17237326-17237480)
chr7 (41-198)||(25275411-25275567)
chr7 (41-192)||(25489923-25490075)
chr7 (45-198)||(31430943-31431098)
chr7 (41-198)||(9118889-9119047)
chr7 (41-198)||(17238187-17238345)
chr7 (45-198)||(31433544-31433698)
chr7 (41-198)||(48909659-48909817)
chr7 (45-192)||(25491061-25491209)
chr7 (45-127)||(9113345-9113427)
chr7 (41-198)||(25274657-25274816)
chr7 (41-127)||(37413789-37413875)
chr7 (45-198)||(31432513-31432667)
chr7 (41-127)||(43101143-43101229)
chr7 (41-198)||(47497403-47497558)
chr7 (41-121)||(47496644-47496724)
chr7 (50-112)||(35891092-35891154)
chr7 (59-127)||(11056803-11056871)
chr7 (56-116)||(43100582-43100642)
chr7 (138-192)||(3223047-3223101)
chr7 (59-111)||(33766278-33766330)
[»] chr2 (15 HSPs)
chr2 (41-197)||(19299662-19299818)
chr2 (41-197)||(33891509-33891665)
chr2 (41-197)||(19298566-19298723)
chr2 (45-198)||(15553464-15553617)
chr2 (41-127)||(33890588-33890674)
chr2 (41-197)||(12299971-12300128)
chr2 (44-127)||(12301029-12301112)
chr2 (89-127)||(5583853-5583891)
chr2 (60-127)||(23834651-23834718)
chr2 (59-117)||(5970675-5970733)
chr2 (60-118)||(18249710-18249768)
chr2 (60-118)||(22293464-22293522)
chr2 (59-112)||(28756472-28756524)
chr2 (165-198)||(33890516-33890549)
chr2 (59-127)||(41305952-41306020)
[»] scaffold0850 (2 HSPs)
scaffold0850 (41-192)||(4545-4697)
scaffold0850 (42-198)||(1450-1607)
[»] scaffold1571 (2 HSPs)
scaffold1571 (45-198)||(44-198)
scaffold1571 (41-125)||(1194-1278)
[»] chr8 (19 HSPs)
chr8 (50-198)||(16434458-16434606)
chr8 (41-192)||(32901478-32901630)
chr8 (41-197)||(8304079-8304235)
chr8 (44-197)||(33586401-33586553)
chr8 (41-198)||(40965-41123)
chr8 (41-192)||(38573638-38573788)
chr8 (45-198)||(32900389-32900542)
chr8 (48-127)||(8303052-8303131)
chr8 (41-127)||(8903592-8903678)
chr8 (50-197)||(16432610-16432758)
chr8 (44-119)||(30780934-30781009)
chr8 (52-127)||(44076492-44076567)
chr8 (41-127)||(7690302-7690388)
chr8 (41-192)||(38574592-38574737)
chr8 (45-127)||(30779937-30780019)
chr8 (44-127)||(44077240-44077323)
chr8 (138-198)||(12317530-12317590)
chr8 (138-198)||(17713449-17713509)
chr8 (138-198)||(27418138-27418198)
[»] chr4 (14 HSPs)
chr4 (50-198)||(7533588-7533737)
chr4 (50-198)||(7535337-7535486)
chr4 (41-198)||(45029840-45029997)
chr4 (41-198)||(30707365-30707522)
chr4 (44-127)||(16076380-16076463)
chr4 (41-127)||(2093640-2093726)
chr4 (41-127)||(46118381-46118467)
chr4 (41-127)||(46131515-46131601)
chr4 (57-117)||(534276-534335)
chr4 (41-113)||(45030798-45030870)
chr4 (49-127)||(16075552-16075628)
chr4 (50-127)||(2438322-2438399)
chr4 (55-112)||(15695091-15695148)
chr4 (50-127)||(37421811-37421888)
[»] scaffold1147 (1 HSPs)
scaffold1147 (50-197)||(2460-2608)
[»] chr5 (11 HSPs)
chr5 (41-126)||(14401398-14401483)
chr5 (42-127)||(2668837-2668922)
chr5 (41-127)||(2667869-2667955)
chr5 (59-127)||(40434546-40434614)
chr5 (50-112)||(11438424-11438486)
chr5 (59-127)||(40434057-40434124)
chr5 (139-198)||(14401325-14401384)
chr5 (60-118)||(10012727-10012785)
chr5 (60-112)||(29520220-29520272)
chr5 (138-198)||(30126444-30126504)
chr5 (50-118)||(37274825-37274893)
[»] chr1 (13 HSPs)
chr1 (41-126)||(39406032-39406117)
chr1 (41-127)||(39404732-39404818)
chr1 (41-126)||(38338191-38338276)
chr1 (43-197)||(52305245-52305400)
chr1 (41-192)||(52304270-52304420)
chr1 (50-118)||(8930257-8930325)
chr1 (139-198)||(39404659-39404718)
chr1 (139-198)||(39406135-39406194)
chr1 (59-118)||(43635912-43635971)
chr1 (60-118)||(6077019-6077077)
chr1 (60-117)||(27547406-27547463)
chr1 (138-198)||(3787238-3787298)
chr1 (138-198)||(23516395-23516455)
[»] scaffold0027 (3 HSPs)
scaffold0027 (41-197)||(51431-51586)
scaffold0027 (41-118)||(52495-52569)
scaffold0027 (138-194)||(52592-52648)
[»] scaffold0048 (2 HSPs)
scaffold0048 (42-127)||(50033-50118)
scaffold0048 (41-127)||(49007-49093)
[»] chr6 (5 HSPs)
chr6 (45-198)||(1756054-1756208)
chr6 (41-127)||(34022706-34022792)
chr6 (44-127)||(34021864-34021947)
chr6 (60-127)||(12322723-12322790)
chr6 (60-112)||(56032-56084)
[»] scaffold0250 (1 HSPs)
scaffold0250 (50-127)||(11478-11555)
[»] scaffold0040 (2 HSPs)
scaffold0040 (50-118)||(64582-64650)
scaffold0040 (39-127)||(65941-66029)
[»] scaffold0227 (1 HSPs)
scaffold0227 (50-118)||(24847-24915)
[»] scaffold0228 (3 HSPs)
scaffold0228 (59-127)||(8153-8221)
scaffold0228 (59-127)||(15735-15803)
scaffold0228 (59-127)||(25687-25755)
[»] scaffold0176 (1 HSPs)
scaffold0176 (60-112)||(206-258)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 267 - 453
Target Start/End: Complemental strand, 8236726 - 8236546
Alignment:
Q  267 gtggctggggtttaatacaatatgaataatataagcgaaattttatttaattgtttcattttagtttacataagtagggttacatgacaaaatattgaat 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8236726 gtggctggggtttaatacaatatgaataatataagcgaaattttatttaattgtttcattttagtttacataagtagggttacatgacaaaatattgaat 8236627  T
Q  367 attcttcattggctgtaggtttagaactgattcacactaagaacaatgtggtctcatgttaccaaatggaacatgtcatgatcaact 453  Q
    |||||||||      |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8236626 attcttcat------taggtttaaaactgattcacactaaaaacaatgtggtctcatgttaccaaatggaacatgtcatgatcaact 8236546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 16386496 - 16386649
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntttacag 144  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||          |||||||    
T  16386496 tcactgccacgtaggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaatttttttttttacag 16386595  T
Q  145 gggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||||||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  16386596 gggctaaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 16386649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 24842968 - 24842820
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntttacaggggct 149  Q
    |||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  24842968 gccacgtaggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaattacaggggct 24842869  T
Q  150 aaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  24842868 aaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 24842820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 22895554 - 22895397
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    |||||||||||||||||||||||||||||||| || ||||||  |||| |||||||||||||||||||||||||||||| |||||||           ||    
T  22895554 cacgtcactgccacgtaggagattctgctgacacattggggtaaggggtcaatcctgaagaatcttcatttttcaaggggggaatctaaaaaaaaaaatt 22895455  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||||||||||| |||||| | | |||||||||||||| ||||||||||||| |||||    
T  22895454 acaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactattaaccct 22895397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 15791833 - 15791916
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||||| |||||||||||| |||||| ||| ||||||||||||| |||||||||||||||| ||| |||||||||    
T  15791833 gtcactgccacgtagaagattctgctgaatcaatgaggttgggggccaatcctaaagaatcttcattttttaagagtggaatct 15791916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 22896382 - 22896538
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    |||||||||||||||||| ||||| ||||||| || ||||||  |||||||||||| |||||||||||||||| ||||||||||| |           ||    
T  22896382 cacgtcactgccacgtagaagattttgctgac-cattggggtgaggggccaatcctaaagaatcttcattttttaagggtggaatttaaaaaaaaaattt 22896480  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||||||||||||| |||||| | | |||||||||||||| ||||||||||||| ||||    
T  22896481 tacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactattaaccc 22896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 24844095 - 24844244
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttacaggggc 148  Q
    |||||||||||||||||||||| ||| | ||||  |||| |||| |||||||||||||||||||||||||||||||||           ||||||| |||    
T  24844095 gccacgtaggagattctgctgagtcattagggtgaggggtcaattctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatttacagaggc 24844194  T
Q  149 taaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||| |||||| | | |||||||||| ||||||||||||||||| |||||    
T  24844195 taaaaccaaaagtgcactatattacaagggccaaaaacactattaaccct 24844244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 54204501 - 54204345
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    |||||||||||||||||  |||||||||| || || ||  ||  ||||||||| |||||||||||||| ||||||||||||||||||          |||    
T  54204501 cacgtcactgccacgtaaaagattctgctcacacattgaagtgaggggccaatgctgaagaatcttca-ttttcaagggtggaatctaaaaaaaaaattt 54204403  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    | |||||||||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  54204402 ataggggctaaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 54204345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 4843398 - 4843484
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||| ||||||||| ||| || || |||  |||| ||||||||||||||||||||||||||||||||||||||    
T  4843398 cacgtcactgccacgtagtagattctgccgacacattgaggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatct 4843484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 4869093 - 4869179
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||| ||||||||| ||| || || |||  |||| ||||||||||||||||||||||||||||||||||||||    
T  4869093 cacgtcactgccacgtagtagattctgccgacacattgaggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatct 4869179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 28556998 - 28556912
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||||||||||||| ||| || ||  ||  |||||||||||||||||||||| |||||||||||||| |||||    
T  28556998 cacgtcactgccacgtaggagattctgccgacacattgtagtgaggggccaatcctgaagaatctttatttttcaagggtgaaatct 28556912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 23545434 - 23545497
Alignment:
Q  49 tgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    |||||||||||||||||||| |||||||  ||||| |||| |||||||||||||||||||||||    
T  23545434 tgccacgtaggagattctgcggactcaactgggtcagggggcaatcctgaagaatcttcatttt 23545497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 15093623 - 15093700
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||| ||| |||  |||||| |||| ||||||||||||||||| ||||| ||||| ||||||||    
T  15093623 gccacgtaggagattctgttgagtcataggggtcagggggcaatcctgaagaatctttattttacaaggatggaatct 15093700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 23539412 - 23539334
Alignment:
Q  49 tgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||||||||||||||||||   |||  |||| ||||||| ||||||||||||||| | ||| ||||||||    
T  23539412 tgccacgtaggagattctgctgactcaactaggttagggggcaatcctaaagaatcttcattttacgaggatggaatct 23539334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 46596242 - 46596165
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||| ||||||||||||| |||  ||||||  ||| ||||||||||||||||| ||||| ||| | ||||||||    
T  46596242 gccacgtaagagattctgctgagtcataggggtcatggggcaatcctgaagaatctttattttacaatgatggaatct 46596165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 22257243 - 22257312
Alignment:
Q  49 tgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    ||||||||  |||||| || |||||||| ||| |||||||  |||||||||||||||| ||||| |||||    
T  22257243 tgccacgtcagagattatgttgactcaaagggctcggggggaaatcctgaagaatctttattttacaagg 22257312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 38842265 - 38842197
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||| ||||||||||||| |||  |||||| | || || |||||||||||||| ||||| |||||    
T  38842265 gccacgtaagagattctgctgagtcataggggtcagaggacattcctgaagaatctttattttacaagg 38842197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 46597407 - 46597495
Alignment:
Q  39 gccacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||| |||||||| |  |||||| |||||| |||||||| |  |||| ||||  ||||||||||||||||| |||||  |||||||    
T  46597407 gccacgtaactgccacctcagagattatgctgagtcaatgggcttagggggcaattgtgaagaatcttcattttacaaggacggaatct 46597495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 1450 - 1607
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||          |||    
T  1450 cacgtcactgccacgtaggagattctgctgactcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaattt 1549  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||||||||||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  1550 acaggggctaaaaccaaaattgctctatattacaggggccaaaaacactattaaccct 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 456 - 304
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    |||||| |||||||||||||||||||| ||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||||           ||    
T  456 cacgtccctgccacgtaggagattctggtgactcattggggtgaggggccaatcctgaagaattttcatttttcaagggtggaatctaaaaataataatt 357  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    ||||||||||||| |||||| | | |||||| |||||||||||||||||||||    
T  356 tacaggggctaaaaccaaaagtgctctatatcacaggggccaaaaacactatt 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 17237480 - 17237326
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntttaca 143  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||          ||||||    
T  17237480 gtcactgccacgtaggagattctgctgactcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtgaaatctaaattttttttttaca 17237381  T
Q  144 ggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||| |||||| | | ||||||||||||||||||||| |||||| |||||    
T  17237380 ggggctaaaaccaaaagtgcactatattacaggggccaaaaatactattaaccct 17237326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 25275411 - 25275567
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    ||||||| |||||||||||||||||||||||| || ||||||  |||||||||||||||||||||||||||||||||||||||||||           ||    
T  25275411 cacgtcattgccacgtaggagattctgctgacacattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaa-tt 25275509  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    | |||||||||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  25275510 ataggggctaaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 25275567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 25490075 - 25489923
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    ||||||||||||||||||||||||||||||||||| || |||  ||||||||||||||||||| |||||||||||||||||||||||           ||    
T  25490075 cacgtcactgccacgtaggagattctgctgactcattgaggtgaggggccaatcctgaagaatattcatttttcaagggtggaatctaaaaaaaaaattt 25489976  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    ||||||||||||| |||||| | | |||||||||||||| |||||||||||||    
T  25489975 tacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactatt 25489923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 31431098 - 31430943
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct--nnnnnnnnnntttac 142  Q
    ||||||||||||||||||||||| ||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||            |||||    
T  31431098 tcactgccacgtaggagattctgttgactcattggggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaacaaaattttac 31430999  T
Q  143 aggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||||||||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  31430998 aggggctaaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 31430943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 9118889 - 9119047
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    |||||||| ||||| |||||||||||||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||           ||    
T  9118889 cacgtcacagccacataggagattctgctgactcattggggtgaggggccaatcctgaagaatcttaatttttcaagggtggaatctaaaaaaaaaaatt 9118988  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    | ||||||||||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  9118989 tgcaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 9119047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 17238187 - 17238345
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    |||||| |||||||||||||||||||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||           ||    
T  17238187 cacgtcgctgccacgtaggagattctgctgactcattggggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaattttttt 17238286  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||||||| |||||| | |  |||||||||||||||||||||| |||| |||||    
T  17238287 tacaggggctaaaaccaaaagtgcattatattacaggggccaaaaacaatattaaccct 17238345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 31433544 - 31433698
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttaca 143  Q
    |||||||||||| |||||||||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||           ||||||    
T  31433544 tcactgccacgtgggagattctgctgactcattggggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatttaca 31433643  T
Q  144 ggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||| |||||| | | ||||||||||| |||||||||||||||| |||||    
T  31433644 ggggctaaaaccaaaagtgcactatattacagaggccaaaaacactattaaccct 31433698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 48909659 - 48909817
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||  ||||||||||||||||||||||||||||||||||||||           ||    
T  48909659 cacgtcactgccacgtaggagattctgctgactcattggggtgagggttcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatt 48909758  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||||||| |||||| ||| ||||||||||| |  ||||||||||||| |||||    
T  48909759 tacaggggctaaaaccaaaagtacactatattacagagatcaaaaacactattaaccct 48909817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 45 - 192
Target Start/End: Original strand, 25491061 - 25491209
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttaca 143  Q
    |||||| |||||||||| ||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  25491061 tcactgtcacgtaggagtttctgctgactcattggggtgaagggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatttaca 25491160  T
Q  144 ggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    ||||||||| |||||| | | ||||||||||||||||||||||||||||    
T  25491161 ggggctaaaaccaaaagtgcactatattacaggggccaaaaacactatt 25491209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 9113427 - 9113345
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||||    
T  9113427 tcactgccacgtaggaaattctgctgactcattggggtgaggggccaatcttgaagaatcttcatttttcaagggtggaatct 9113345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 25274816 - 25274657
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct--nnnnnnnnnnt 138  Q
    |||||||||||||||||||||||||||||||| || | ||||  |||| ||||||||||||||||| ||||||||||||||||||||            |    
T  25274816 cacgtcactgccacgtaggagattctgctgacacatttgggtgaggggtcaatcctgaagaatctttatttttcaagggtggaatctaaaaaaaaaaaat 25274717  T
Q  139 ttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||| |||| | |||| | | |||||||||||||||||||||||||||| |||||    
T  25274716 ttacaggggttaaaactaaaagtgcactatattacaggggccaaaaacactattaaccct 25274657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 37413875 - 37413789
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||||||||||||||||| || ||||||  |||| ||||||||||||||||||||||||||||| ||||||||    
T  37413875 cacgtcactgccacgtaggagattctgctgacacattggggtgaggggtcaatcctgaagaatcttcatttttcaaggatggaatct 37413789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 31432667 - 31432513
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttaca 143  Q
    |||| |||||||||||||||||||||||| | ||||||  | || ||||||||||||||||||||||||||||||||||||||           ||||||    
T  31432667 tcacagccacgtaggagattctgctgacttattggggtgagtggtcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatttaca 31432568  T
Q  144 ggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
     |||||||| |||||| | | ||||||||||||||||||||||| |||| |||||    
T  31432567 agggctaaaaccaaaagtgcactatattacaggggccaaaaacattattaaccct 31432513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 43101143 - 43101229
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||| ||| ||||||||||||| || ||||||  || |||||||||||||||||||||||||||||||||| |||||    
T  43101143 cacgtcactgccacatagcagattctgctgacacattggggttaggagccaatcctgaagaatcttcatttttcaagggtgaaatct 43101229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 47497403 - 47497558
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    ||||||||||| | ||||||||||||| |||| || ||||||  |||| |||||| ||||||||||||||||||||||||||||||           |||    
T  47497403 cacgtcactgcgatgtaggagattctgttgacacattggggtgaggggtcaatcccgaagaatcttcatttttcaagggtggaatc--aaaaaaaaattt 47497500  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||| ||||||| |||||| | | |||||||| || |||||||||||||||| |||||    
T  47497501 acagaggctaaaaccaaaagtgcactatattatagaggccaaaaacactattaaccct 47497558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 47496724 - 47496644
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtg 121  Q
    ||||||| |||||||||| ||||||||||||| || ||||||  |||| |||| ||||||||| |||||||||||||||||    
T  47496724 cacgtcattgccacgtagaagattctgctgacacattggggtgaggggtcaattctgaagaattttcatttttcaagggtg 47496644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 35891154 - 35891092
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    |||||||| ||||||||||||| |||  |||||| |||| ||||||||||||||||| |||||    
T  35891154 gccacgtaagagattctgctgagtcataggggtcagggggcaatcctgaagaatctttatttt 35891092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 11056871 - 11056803
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||  |||||||    
T  11056871 gagattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaaggacggaatct 11056803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 43100642 - 43100582
Alignment:
Q  56 taggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaa 116  Q
    ||||||||||||||||| || | ||||  |||||||||| |||||||||||||||| ||||    
T  43100642 taggagattctgctgacacatttgggtgaggggccaatcttgaagaatcttcatttctcaa 43100582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 3223101 - 3223047
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    ||||||||||| ||| ||||||||  |||||||||||||||  ||||||||||||    
T  3223101 tttacaggggcgaaatccaaaaatgacctatattacaggggtgaaaaacactatt 3223047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 33766330 - 33766278
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcattt 111  Q
    |||||||||||||||||| ||| ||||||| |||| ||||| |||||| ||||    
T  33766330 gagattctgctgactcaaagggttcgggggacaattctgaaaaatctttattt 33766278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 19299662 - 19299818
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||           ||    
T  19299662 cacgtcactgccacgtaggagattctgctgactcattggggt-gggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaattt 19299760  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||||||||||||| |||||| | | ||||||||||||||| |||||||||||| ||||    
T  19299761 tacaggggctaaaaccaaaagtgctctatattacaggggctaaaaacactattaaccc 19299818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 33891509 - 33891665
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    ||||||||||||||||| |||||||||||||| || ||||||  |||||||||||||||||| ||||||||||||||||||||||||           ||    
T  33891509 cacgtcactgccacgtaagagattctgctgacacattggggtgaggggccaatcctgaagaaacttcatttttcaagggtggaatctaaaaaaaaaaatt 33891608  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    |||||||||||| |||||| | | |||||||||||||||||||||||||||| ||||    
T  33891609 acaggggctaaaaccaaaagtgcactatattacaggggccaaaaacactattaaccc 33891665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 19298723 - 19298566
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    |||||||||||||||||||||||||||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||||            |    
T  19298723 cacgtcactgccacgtaggagattctgctggctcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaataaat 19298624  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    || |||||||||| |||||| | | ||||||||||||| |||||||||||||| ||||    
T  19298623 tagaggggctaaaaccaaaagtccactatattacagggaccaaaaacactattaaccc 19298566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 15553464 - 15553617
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntttacag 144  Q
    ||||||||  |||||||||| |||||||  | ||||||| |||| ||||||||||||||||||||||||||||||||||||||           ||||||    
T  15553464 tcactgccctgtaggagattttgctgacatattggggtcaggggtcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaatattacag 15553563  T
Q  145 gggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||||||| |||||||| | | |||||||||| ||||||||||||||| |||||    
T  15553564 gggctaaaaccaaaaatgcaccatattacaggagccaaaaacactattaaccct 15553617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 33890674 - 33890588
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||||||||||||||||| || ||||||   ||| ||||||||||||||||||||||||||||||||||||||    
T  33890674 cacgtcactgccacgtaggagattctgctgacacattggggtgacgggacaatcctgaagaatcttcatttttcaagggtggaatct 33890588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 12300128 - 12299971
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    |||||||||||||||||||||||||||||||| || |||| |  |||||||||  ||||||||||||||||||||||||||||||||            |    
T  12300128 cacgtcactgccacgtaggagattctgctgacacattgggatgaggggccaattatgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaaat 12300029  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||||||   |||| |||||| ||| |||||||||||||||||||||||||||| ||||    
T  12300028 tacaggaattaaaaccaaaagtacactatattacaggggccaaaaacactattaaccc 12299971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 12301029 - 12301112
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||| ||||||||||||||||| || ||||||  |||| ||||||||||||||||| ||||||||||||||||||||    
T  12301029 gtcactgccacataggagattctgctgacacattggggtgaggggtcaatcctgaagaatctttatttttcaagggtggaatct 12301112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 5583853 - 5583891
Alignment:
Q  89 ccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  5583853 ccaatcctaaagaatcttcatttttcaagggtggaatct 5583891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 23834718 - 23834651
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||  |||||||    
T  23834718 agattctgctgagtcaatgggcttaggggacaatcgtgaagaatcttcattttacaaggacggaatct 23834651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 5970675 - 5970733
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaag 117  Q
    ||||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| ||||    
T  5970675 gagattctgctgagtcaatgggcttaggggacaatcgtgaagaatcttcattttacaag 5970733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 18249768 - 18249710
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||    
T  18249768 agattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaagg 18249710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 22293464 - 22293522
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    ||||||||||||||||| ||| | ||||| |||| |||||||||||| ||||| |||||    
T  22293464 agattctgctgactcaaagggcttggggggcaatactgaagaatctttattttacaagg 22293522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 28756472 - 28756524
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    |||||||||||||||||| ||| ||| ||| ||||||||||||||||| |||||    
T  28756472 gagattctgctgactcaa-gggttcgtggggcaatcctgaagaatctttatttt 28756524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 33890549 - 33890516
Alignment:
Q  165 ctatattacaggggccaaaaacactatttaccct 198  Q
    |||||||||||||||||||||||||||| |||||    
T  33890549 ctatattacaggggccaaaaacactattaaccct 33890516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 41306020 - 41305952
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||| |||||||| |  |||| ||||| ||||||| ||||||||| |||||  |||||||    
T  41306020 gagattctgctgagtcaatgggtttagggggcaatcgtgaagaagcttcattttacaaggacggaatct 41305952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0850 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0850
Description:

Target: scaffold0850; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 4545 - 4697
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||           ||    
T  4545 cacgtcactgccacgtaggagattctgctgactcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaattttttttt 4644  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    ||||||||||||| |||||| | | |||||||||| |||||||||||||||||    
T  4645 tacaggggctaaaaccaaaagtgcactatattacaagggccaaaaacactatt 4697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0850; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 1607 - 1450
Alignment:
Q  42 acgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnnttt 140  Q
    ||||||||||||||||| |||||||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||           |||    
T  1607 acgtcactgccacgtagaagattctgctgactcattggggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaataattt 1508  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||||||||||| |||||| | | |||||||||| ||||||||||||||||| |||||    
T  1507 acaggggctaaaaccaaaagtgcactatattacaagggccaaaaacactattaaccct 1450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1571 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: scaffold1571
Description:

Target: scaffold1571; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 198 - 44
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttaca 143  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  198 tcactgccacgtaggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaattttttttttttaca 99  T
Q  144 ggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  98 ggggctaaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 44  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1571; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 1194 - 1278
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaat 125  Q
    |||||||||||||| |||||||||||||||||||| || |||  |||||||||||||||||||||||||||||||||||||||||    
T  1194 cacgtcactgccacataggagattctgctgactcattgaggtgaggggccaatcctgaagaatcttcatttttcaagggtggaat 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 9e-37; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 16434458 - 16434606
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntttacaggggct 149  Q
    |||||||||||||||||||||| ||| ||||||  ||||||| |||||||||||||||||||||||||||||||||||          ||||||||||||    
T  16434458 gccacgtaggagattctgctgagtcattggggtgaggggccagtcctgaagaatcttcatttttcaagggtggaatctaatttttttttttacaggggct 16434557  T
Q  150 aaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  16434558 aaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 16434606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 32901478 - 32901630
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    ||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||           ||    
T  32901478 cacgtcactgccacgtatgagattctgctgactcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaagaaaattttt 32901577  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    ||||||||||||| |||||| | | |||||||||||||| |||||||||||||    
T  32901578 tacaggggctaaaaccaaaagtgcactatattacaggggtcaaaaacactatt 32901630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 41 - 197
Target Start/End: Original strand, 8304079 - 8304235
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    |||||| |||||| ||||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||||||||||||||           ||    
T  8304079 cacgtccctgccatgtaggagattctgctgactcattggagtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatt 8304178  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||||||||||||  ||||| | | ||||||||||||| |||||||||||||| ||||    
T  8304179 acaggggctaaaatcaaaagtgcactatattacagggaccaaaaacactattaaccc 8304235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 33586401 - 33586553
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntttaca 143  Q
    |||||||||||||||||||||||||| || || ||||||  |||| ||||||||||||||||||||||||||||||||||||||          ||||||    
T  33586401 gtcactgccacgtaggagattctgctaacacattggggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatct-aaaaaaaaatttaca 33586499  T
Q  144 ggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||||||||| |||||| | | ||||||||||||| |||||||||||||| ||||    
T  33586500 ggggctaaaaccaaaagtgcactatattacagggaccaaaaacactattaaccc 33586553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 40965 - 41123
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntt 139  Q
    |||||||||||||||||| ||||||||||||| || ||||||  ||||||||||||||||||| ||||||||| |||||||||||||           ||    
T  40965 cacgtcactgccacgtagaagattctgctgacacattggggtgaggggccaatcctgaagaattttcattttttaagggtggaatctaaaaaattttttt 41064  T
Q  140 tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||||||| | |||| | | |||||||| ||||||||||||||||||| |||||    
T  41065 tacaggggctaaaactaaaagtgcactatattagaggggccaaaaacactattaaccct 41123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 38573788 - 38573638
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    |||||||||||||| ||||||||||||||||| |  ||||||  |||||||||||||||||||||||||||||||||||||||||||          |||    
T  38573788 cacgtcactgccacataggagattctgctgacacgttggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatct-aatttttttttt 38573690  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    |||||||| |||  ||||| | | |||||||||||||| |||||||||||||    
T  38573689 acaggggcaaaaatcaaaagtgcactatattacaggggtcaaaaacactatt 38573638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 32900542 - 32900389
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntttacag 144  Q
    ||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||||||||||||||||||| ||||||||||||          ||||||     
T  32900542 tcactgccacgtaggaggttctgctgactcattggggtgaggggtcaatcctgaagaatcttcatttttctagggtggaatctaaaaaaaaaatttacat 32900443  T
Q  145 gggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||| ||||  ||||| | | |||||||||||||| ||||||||||||| |||||    
T  32900442 gggttaaaatcaaaagtgcgctatattacaggggacaaaaacactattaaccct 32900389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 8303131 - 8303052
Alignment:
Q  48 ctgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||| ||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||||||    
T  8303131 ctgcgacgtaggagattctgctgactcattggggtgagtggccaatcctgaagaatcttcatttttcaagggtggaatct 8303052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 8903592 - 8903678
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||||||||||||||||| || |||||   |||||||||||| |||||||||||||||||||||||| |||||    
T  8903592 cacgtcactgccacgtaggagattctgctgacacattggggggaggggccaatcctaaagaatcttcatttttcaagggtgaaatct 8903678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 16432758 - 16432610
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttacaggggc 148  Q
    ||||| |||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  16432758 gccacataggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaatttttttttttacaggggc 16432659  T
Q  149 taaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||||  ||||| | | |||||||||||| | ||||||||||||| ||||    
T  16432658 taaaatcaaaagtgcactatattacaggagtcaaaaacactattaaccc 16432610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 30780934 - 30781009
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaaggg 119  Q
    ||||||||||||||||||||||||||||| || || |||| |||||||||||| ||||||||||||||||||||||    
T  30780934 gtcactgccacgtaggagattctgctgacacattgaggtcaggggccaatcctaaagaatcttcatttttcaaggg 30781009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 44076567 - 44076492
Alignment:
Q  52 cacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||||||||||| || ||||||  |||||||||||| |||||| |||||||||||||||||||||||    
T  44076567 cacgtaggagattctgctgacacattggggtgaggggccaatcctcaagaattttcatttttcaagggtggaatct 44076492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 7690388 - 7690302
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||| ||||| | |||||||||||||||||| || || |||   ||||||||||||||||||||||||||||||||||||||||||    
T  7690388 cacgttactgctatgtaggagattctgctgacacattgaggtgatgggccaatcctgaagaatcttcatttttcaagggtggaatct 7690302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 38574592 - 38574737
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnntt- 139  Q
    |||||||||||||||||||||||||||||||  || ||||||  |||||        ||||||||||||||||||||||||||||||                 
T  38574592 cacgtcactgccacgtaggagattctgctgatacattggggtgaggggc--------aagaatcttcatttttcaagggtggaatctaaaaaaaataaaa 38574683  T
Q  140 -tacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
     ||||||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  38574684 atacaggggctaaaaccaaaagtacactatattacaggggccaaaaacactatt 38574737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 30780019 - 30779937
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||||||||||||| || || |||| | || ||||||  ||||||||| ||||||||| ||||||||||    
T  30780019 tcactgccacgtaggagattctgctgacacattgaggtcagaggtcaatccgaaagaatctttatttttcaaaggtggaatct 30779937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 44077240 - 44077323
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||| |||||||||||||||||||||| || || |||  || | ||||||| |||||| |||||||| ||||| ||||||||    
T  44077240 gtcactaccacgtaggagattctgctgacacattgaggtgaggtgtcaatcctaaagaattttcattttccaaggatggaatct 44077323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 12317590 - 12317530
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||||| ||| || |||||| |||||||||||||||  |||||||||||| |||||    
T  12317590 tttacaggggcgaaaaccgaaaataacctatattacaggggtgaaaaacactattaaccct 12317530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 17713509 - 17713449
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||| |||||| ||| ||||||||  |||||||||||||||  |||||||||||| |||||    
T  17713509 tttataggggcgaaaaccaaaaatgacctatattacaggggtgaaaaacactattaaccct 17713449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 27418138 - 27418198
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||||| ||| || |||||  |||||||||||||||  |||||||||||| |||||    
T  27418138 tttacaggggcgaaaaccgaaaatgacctatattacaggggtgaaaaacactattaaccct 27418198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 50 - 198
Target Start/End: Complemental strand, 7533737 - 7533588
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttacaggggc 148  Q
    |||||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  7533737 gccacgtaggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaatttttttttttacaggggc 7533638  T
Q  149 taaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  7533637 taaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 7533588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 7535337 - 7535486
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttacaggggc 148  Q
    |||||||||||||||||||||| ||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||           |||||||||||    
T  7535337 gccacgtaggagattctgctgagtcattggggtgaggggctaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaattttacaggggc 7535436  T
Q  149 taaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||| |||||| | | |||||||||||||||||||||||||||| |||||    
T  7535437 taaaaccaaaagtgcactatattacaggggccaaaaacactattaaccct 7535486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 45029997 - 45029840
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    |||||||| ||||||||||||||||||||||| || | ||||  ||||  |||||||||||||||||||||||||||||||||||||          |||    
T  45029997 cacgtcaccgccacgtaggagattctgctgacacattcgggtgaggggtaaatcctgaagaatcttcatttttcaagggtggaatctaattttttttttt 45029898  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||  ||||||| | |||| | | |||||||||||||| ||||||||||||| |||||    
T  45029897 acaaaggctaaaacgaaaagtgcactatattacaggggtcaaaaacactattaaccct 45029840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 30707365 - 30707522
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    ||||||| |||||||||||||||||||||||| || ||||||  |||| |||||||||||||| ||||||||| ||| |||||||||          |||    
T  30707365 cacgtcattgccacgtaggagattctgctgacacattggggtgaggggtcaatcctgaagaatattcatttttgaagagtggaatctaaatttttttttt 30707464  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    | ||||| |||| |||||| | | |||||||| |||||||||||| |||||| |||||    
T  30707465 agaggggttaaaaccaaaagtgcactatattataggggccaaaaatactattaaccct 30707522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 16076380 - 16076463
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||||||| ||||||||||| || ||||||  |||||||||||| |||||| |||||||||||||| ||||||||    
T  16076380 gtcactgccacgtaggaaattctgctgacacattggggtgaggggccaatcctaaagaattttcatttttcaaggatggaatct 16076463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 2093640 - 2093726
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||| ||| |||||||||||||||||| || ||||||  |||| |||||||||| |||||||| ||||||||||||||||||    
T  2093640 cacgtcactaccatgtaggagattctgctgacacattggggtgaggggtcaatcctgaaaaatcttcacttttcaagggtggaatct 2093726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 46118467 - 46118381
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||| |||||||||||||||||||||||| | || ||||||  |||| |||||||||||||| || ||||||||||||||||||||    
T  46118467 cacgttactgccacgtaggagattctgctgccacattggggtgaggggtcaatcctgaagaatttttatttttcaagggtggaatct 46118381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 46131601 - 46131515
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||| |||||||||||||||||||||||| | || ||||||  |||| |||||||||||||| || ||||||||||||||||||||    
T  46131601 cacgttactgccacgtaggagattctgctgccacattggggtgaggggtcaatcctgaagaatttttatttttcaagggtggaatct 46131515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 534276 - 534335
Alignment:
Q  57 aggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaag 117  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  534276 aggagattctgctgactcaatggggtc-ggggccaatcccgaagaatcttcatttttcaag 534335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 45030798 - 45030870
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcattttt 113  Q
    ||||||||| |||||||||||||||||||||| || || |||  ||||| |||||||||||||||||||||||    
T  45030798 cacgtcacttccacgtaggagattctgctgacacattgaggtgaggggctaatcctgaagaatcttcattttt 45030870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 16075628 - 16075552
Alignment:
Q  49 tgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||| |||||||||||  | ||||||  |||| ||||||| ||||||||||||||||||||||||||||||    
T  16075628 tgccacgtaggatattctgctgac--attggggtgaggggtcaatcctaaagaatcttcatttttcaagggtggaatct 16075552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 2438399 - 2438322
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||| ||||||||||||| |||  |||||| |||  ||||||||||||||||| ||||| ||||| ||||||||    
T  2438399 gccacgtaagagattctgctgagtcataggggtcagggagcaatcctgaagaatctttattttacaaggatggaatct 2438322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 15695091 - 15695148
Alignment:
Q  55 gtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    ||||||||||||||||||||||  || |  |||| |||||||||||||||||||||||    
T  15695091 gtaggagattctgctgactcaactggcttaggggacaatcctgaagaatcttcatttt 15695148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 37421811 - 37421888
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||| ||||||||||||| | |  |||||| | || |||||||||| |||||| ||||| ||||| ||||||||    
T  37421811 gccacgtaagagattctgctgagttataggggtctgagggcaatcctgaataatctttattttacaaggatggaatct 37421888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1147 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 50 - 197
Target Start/End: Complemental strand, 2608 - 2460
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttacaggggc 148  Q
    ||||| |||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||           |||||||||||    
T  2608 gccacataggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaaatttacaggggc 2509  T
Q  149 taaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    |||| |||||| | | |||||||||||||||||||||||||||| ||||    
T  2508 taaaaccaaaagtgcactatattacaggggccaaaaacactattaaccc 2460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 14401483 - 14401398
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatc 126  Q
    |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  14401483 cacgtcactgccacgtaggagattctgctgacacattggggtgtggggccaatcctgaagaatcttcatttttcaagggtggaatc 14401398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 2668837 - 2668922
Alignment:
Q  42 acgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||||||||||||||||||||| || |||||   ||||| ||| |||||||||||||||||||||||||||||||||    
T  2668837 acgtcactgccacgtaggagattctgctgacacattggggagaggggctaatactgaagaatcttcatttttcaagggtggaatct 2668922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 2667955 - 2667869
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||  || ||||||||||||||||| || || |||  |||| |||||||||||||||||| |||||||| ||| ||||||    
T  2667955 cacgtcactgttacataggagattctgctgacacattgaggtgaggggtcaatcctgaagaatcttcgtttttcaaaggttgaatct 2667869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 40434614 - 40434546
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| ||||| ||||||||    
T  40434614 gagattctgctgagtcaatgggcttaggggacaatcgtgaagaatcttcattttacaaggatggaatct 40434546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 11438486 - 11438424
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    |||||||| ||||||||||||| |||  |||||| |||| ||||||||||||||||| |||||    
T  11438486 gccacgtaagagattctgctgagtcataggggtcaggggacaatcctgaagaatctttatttt 11438424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 40434124 - 40434057
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||| | | |||||||| |||||||||||||||| ||||| |||||  |||||||    
T  40434124 gagattctgctgactcaaagagctcgggggc-aatcctgaagaatctttattttacaaggacggaatct 40434057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 14401384 - 14401325
Alignment:
Q  139 ttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||| |||||||| |||||| | | |||||||||||||||||||| ||||||| |||||    
T  14401384 ttacaagggctaaaaccaaaagttcactatattacaggggccaaaatcactattaaccct 14401325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 10012727 - 10012785
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||    
T  10012727 agattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaagg 10012785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 29520272 - 29520220
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    |||||||||||| |||||||| |  |||| ||||| |||||||||||||||||    
T  29520272 agattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcatttt 29520220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 30126504 - 30126444
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    |||| |||||| ||| ||||||||| | |||||||||||||  |||||||||||| |||||    
T  30126504 tttataggggcgaaaaccaaaaataacatatattacaggggtaaaaaacactattaaccct 30126444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 37274893 - 37274825
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||| ||||||||||||| |||  || ||  |||| ||||||||||||||||| ||||| |||||    
T  37274893 gccacgtaagagattctgctgagtcataggagttagggggcaatcctgaagaatctttattttacaagg 37274825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 39406032 - 39406117
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatc 126  Q
    |||||||||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  39406032 cacgtcactgccacgtaggagattctgctgacacattggggtgaggggccaatcctgaagaatcttcatttttcaagggtggaatc 39406117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 39404818 - 39404732
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||| ||||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  39404818 cacgtcactgccacataggagattctgctgacacattggggtgaggggccaatcctgaagaatcttcatttttcaagagtggaatct 39404732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 38338191 - 38338276
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatc 126  Q
    ||||||||||| |||||||||||||||||||| || |||| |  |||||||||||||||||||||||||||||||| |||||||||    
T  38338191 cacgtcactgctacgtaggagattctgctgacacattgggatgaggggccaatcctgaagaatcttcatttttcaaaggtggaatc 38338276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 43 - 197
Target Start/End: Original strand, 52305245 - 52305400
Alignment:
Q  43 cgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnnttta 141  Q
    |||||||||||||||||||||||| ||||| || ||||||   ||| |||||||||||||||||||||||| |||||||||||||           ||||    
T  52305245 cgtcactgccacgtaggagattctactgacacattggggtgaagggtcaatcctgaagaatcttcattttttaagggtggaatctaaaaaaaaaaattta 52305344  T
Q  142 caggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||| ||||||| |||||| | | |||||||||||||| ||||||||||||| ||||    
T  52305345 cagcggctaaaaccaaaagtgcactatattacaggggtcaaaaacactattaaccc 52305400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 192
Target Start/End: Complemental strand, 52304420 - 52304270
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    ||||||| ||||||||| |||||||||||||  || |  |||  |||| ||||||||||||||||||||||||||||||||||||||          |||    
T  52304420 cacgtcattgccacgtatgagattctgctgagacatttaggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatct-aatttttttttt 52304322  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatt 192  Q
    |||||||||||| |||||| | | |||||||||||||| |||||| ||||||    
T  52304321 acaggggctaaaaccaaaagtgcactatattacaggggtcaaaaatactatt 52304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 8930257 - 8930325
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||| ||||||||||||| |||  |||||| |||| ||||||||||||||||| ||||| |||||    
T  8930257 gccacgtaagagattctgctgagtcataggggtcagggggcaatcctgaagaatctttattttacaagg 8930325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 39404718 - 39404659
Alignment:
Q  139 ttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||| |||||||| |||||| | | | |||||||||||||||||||||||||| |||||    
T  39404718 ttacaagggctaaaaccaaaagtgcaccatattacaggggccaaaaacactattaaccct 39404659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 39406135 - 39406194
Alignment:
Q  139 ttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||| |||| |||||| | | | |||||||||||||||||||||||||| |||||    
T  39406135 ttacaggggttaaaaccaaaagtgcaccatattacaggggccaaaaacactattaaccct 39406194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 43635971 - 43635912
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    ||||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||    
T  43635971 gagattctgctgagtcaatgggcttaggggtcaatcgtgaagaatcttcattttacaagg 43635912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 6077077 - 6077019
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||    
T  6077077 agattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaagg 6077019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 27547463 - 27547406
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaag 117  Q
    |||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| ||||    
T  27547463 agattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaag 27547406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 3787298 - 3787238
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||||| ||| || |||||  |||||||||||||||  |||||||||||| |||||    
T  3787298 tttacaggggcgaaaaccgaaaatgacctatattacaggggtgaaaaacactattaaccct 3787238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 23516395 - 23516455
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||||| ||| || |||||| ||||||||| |||||  |||||||||||| |||||    
T  23516395 tttacaggggcaaaaaccgaaaatagcctatattataggggtgaaaaacactattaaccct 23516455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 51586 - 51431
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatctnnnnnnnnnnttt 140  Q
    |||||||||||||||||||||||| ||||||| || ||||||    |||||||||||||||||||||||||||||||||||||||||           ||    
T  51586 cacgtcactgccacgtaggagattatgctgacacattggggtgataggccaatcctgaagaatcttcatttttcaagggtggaatctaaaaaaaaaa-tt 51488  T
Q  141 acaggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccc 197  Q
    ||||||||||||  ||||| | | |||||||||||||||||||||||||||| ||||    
T  51487 acaggggctaaaatcaaaagtgcactatattacaggggccaaaaacactattaaccc 51431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 52495 - 52569
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||||||||||||||||||||||||||| || ||| ||  ||||||||||||   |||||||||||||||||||    
T  52495 cacgtcactgccacgtaggagattctgctgacacattggagtgaggggccaatcct---gaatcttcatttttcaagg 52569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 52592 - 52648
Alignment:
Q  138 tttacaggggctaaacccaaaaataccctatattacaggggccaaaaacactattta 194  Q
    ||||||||||||||| | |||| | | ||||||||||||||||||||||||||||||    
T  52592 tttacaggggctaaaactaaaagtgcactatattacaggggccaaaaacactattta 52648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 50033 - 50118
Alignment:
Q  42 acgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||||||||||||||||||||| || || |||| |||||||||||| ||||||||||||||||||||||||||||||    
T  50033 acgtcactgccacgtaggagattctgctgacacattgaggtcaggggccaatcctaaagaatcttcatttttcaagggtggaatct 50118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 127
Target Start/End: Complemental strand, 49093 - 49007
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||||||||||||||||| || || |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  49093 cacgtcactgccacgtaggagattctgctgacacattgaggtcaggggccaatccggaagaatcttcatttttcaagtgtggaatct 49007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 1756208 - 1756054
Alignment:
Q  45 tcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct-nnnnnnnnnntttaca 143  Q
    |||||||||||||||||||||| ||||| || || |||| ||||||||||| |||||||||||||||||||||||||||||||           ||||||    
T  1756208 tcactgccacgtaggagattctactgacacattgaggtcaggggccaatccggaagaatcttcatttttcaagggtggaatctaaaaagataattttaca 1756109  T
Q  144 ggggctaaacccaaaaataccctatattacaggggccaaaaacactatttaccct 198  Q
    ||||||||| || ||| | | | ||||||||||||||| |||||||||| |||||    
T  1756108 ggggctaaaaccgaaagtgcaccatattacaggggccagaaacactattaaccct 1756054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 34022706 - 34022792
Alignment:
Q  41 cacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||||||||||| ||||||| ||| || ||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  34022706 cacgtcactgccacgtaggatattctgcggacacattggggtgtggggccaatcctgaagaatcttcatttttcaagggtgaaatct 34022792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 44 - 127
Target Start/End: Complemental strand, 34021947 - 34021864
Alignment:
Q  44 gtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||| ||||||||||| ||||| || ||||||  |||| ||||||||||||||||||||||||||||||||||||||    
T  34021947 gtcactgccacataggagattctactgacacattggggtgaggggtcaatcctgaagaatcttcatttttcaagggtggaatct 34021864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 12322723 - 12322790
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||  |||||||    
T  12322723 agattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaaggacggaatct 12322790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 56032 - 56084
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    |||||||||||| |||||||| |  |||| ||||| |||||||||||||||||    
T  56032 agattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcatttt 56084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 11478 - 11555
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    |||||||| ||||||||||||| |||  |||||| |||| ||||||||||||||||| ||||| |||||  |||||||    
T  11478 gccacgtaagagattctgctgagtcataggggtcagggggcaatcctgaagaatctttattttacaaggacggaatct 11555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 64650 - 64582
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||| ||||||||||||| |||  |||||| |||| ||||||||||||||||| ||||| |||||    
T  64650 gccacgtaagagattctgctgagtcacaggggtcagggggcaatcctgaagaatctttattttacaagg 64582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 65941 - 66029
Alignment:
Q  39 gccacgtcactgccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||| | |||||| | |||||||||||||| |||||||| |  |||| ||||| ||||||||||||||||| |||||  |||||||    
T  65941 gccacgtaagtgccacctcggagattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaaggacggaatct 66029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 24847 - 24915
Alignment:
Q  50 gccacgtaggagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagg 118  Q
    |||||||| |||||| |||||| |||  |||||| |||| ||||||||||||||||| ||||| |||||    
T  24847 gccacgtaagagattttgctgagtcataggggtcagggggcaatcctgaagaatctttattttacaagg 24915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 8221 - 8153
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||| |||||||| |  |||| ||||| |||| |||||||||||| |||||  |||||||    
T  8221 gagattctgctgagtcaatgggcttagggggcaatcgtgaaaaatcttcattttacaaggacggaatct 8153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 15803 - 15735
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||| |||||||| |  |||| ||||| |||| |||||||||||| |||||  |||||||    
T  15803 gagattctgctgagtcaatgggcttagggggcaatcgtgaaaaatcttcattttacaaggacggaatct 15735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 25755 - 25687
Alignment:
Q  59 gagattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttttcaagggtggaatct 127  Q
    ||||||||||||| |||||||| |  |||| ||||| |||| |||||||||||| |||||  |||||||    
T  25755 gagattctgctgagtcaatgggcttagggggcaatcgtgaaaaatcttcattttacaaggacggaatct 25687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 206 - 258
Alignment:
Q  60 agattctgctgactcaatggggtcgggggccaatcctgaagaatcttcatttt 112  Q
    |||||||||||| |||| ||| || |||| ||||| |||||||||||||||||    
T  206 agattctgctgagtcaaagggctcagggggcaatcttgaagaatcttcatttt 258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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