View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_low_1 (Length: 730)

Name: NF18856_low_1
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_low_1
NF18856_low_1
[»] chr3 (6 HSPs)
chr3 (22-361)||(33631341-33631680)
chr3 (418-653)||(33631735-33631947)
chr3 (545-653)||(17057142-17057250)
chr3 (652-716)||(33632162-33632226)
chr3 (652-716)||(17057468-17057532)
chr3 (505-542)||(33632536-33632573)
[»] chr7 (1 HSPs)
chr7 (531-648)||(43492947-43493063)
[»] chr5 (2 HSPs)
chr5 (555-611)||(43378621-43378677)
chr5 (555-611)||(43379448-43379504)
[»] chr6 (1 HSPs)
chr6 (555-605)||(13207395-13207445)
[»] chr1 (2 HSPs)
chr1 (503-586)||(15668268-15668351)
chr1 (498-527)||(7338846-7338875)
[»] chr2 (1 HSPs)
chr2 (296-360)||(15873839-15873904)
[»] chr8 (1 HSPs)
chr8 (555-605)||(28584354-28584404)
[»] scaffold0151 (1 HSPs)
scaffold0151 (558-611)||(20792-20845)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 22 - 361
Target Start/End: Original strand, 33631341 - 33631680
Alignment:
Q  22 aggcaaggtgggttgggggcatttaactggacaaacctgtcgatgagaatgaagaaaaaaggatgatcaagaaatcaattttgttttaatttggtatata 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33631341 aggcaaggtgggttgggggcatttaactggacaaacctgtcgatgagaatgaagaaaaaaggatgatcaagaaatcaattttgttttaatttggtatata 33631440  T
Q  122 ttcaagtttgcatttaagtgaatttaaggtggtttaatgaagataggtagccttacctgaaactgaagccccatctctctcttaatgcctttaatggcat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33631441 ttcaagtttgcatttaagtgaatttaaggtggtttaatgaagataggtagccttacctgaaactgaagccccatctctctcttaatgcctttaatggcat 33631540  T
Q  222 ggtggttggatccatcaannnnnnncctactactgctatttctattaggaaaataactggtgttcttgatgcattagtttaagaaacaaatataataaga 321  Q
    ||| ||||||||||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33631541 ggtagttggatccatcaatttttttcctactactgctatttctattaggaaaataaccggtgttcttgatgcattagtttaagaaacaaatataataaga 33631640  T
Q  322 atattttgaaacttacgtaatcaaatgcttaaaagtgtag 361  Q
    || |||||||||||||||||||||||||||||||||||||    
T  33631641 attttttgaaacttacgtaatcaaatgcttaaaagtgtag 33631680  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 418 - 653
Target Start/End: Original strand, 33631735 - 33631947
Alignment:
Q  418 cggaagtatcggttaacatgactctttctattgacgtgcactaataattttttgttaattagtcttgcatggttcccttaaaaaatatgagtccatcttt 517  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  33631735 cggaggtatcggttaacatgactctttctattgaggtgcactaataattttttgttaattagtcttgcatggttcccttaaaaaatatgagtccatc--- 33631831  T
Q  518 gctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnn 617  Q
                       ||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||          
T  33631832 -------------------tatttagacctgttcacttcttagatgtgtgacacatggcaaaaatgaaactaacgattgagataaaaatgtttg-gaaaa 33631911  T
Q  618 nncacttgtttattgaataaaaaatcaacattcgcg 653  Q
      |||||||||| |||||||||||||||||||||||    
T  33631912 aacacttgtttactgaataaaaaatcaacattcgcg 33631947  T

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Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 545 - 653
Target Start/End: Original strand, 17057142 - 17057250
Alignment:
Q  545 cctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnnnncacttgtttattgaat-aaaaaatc 643  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        |||||||||| ||||| ||||||||    
T  17057142 cctgttcacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaaggtttg-gaaaaaacacttgtttactgaataaaaaaatc 17057240  T
Q  644 aacattcgcg 653  Q
    ||||||||||    
T  17057241 aacattcgcg 17057250  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 33632162 - 33632226
Alignment:
Q  652 cgatcttctttctcttgttgttggatatgtgttgttccactcttcaatttcactcttgatctgtg 716  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  33632162 cgatcttctttctcttgttgttggatctgtgttgttgcactcttcaatttcactcttgatctgtg 33632226  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 652 - 716
Target Start/End: Original strand, 17057468 - 17057532
Alignment:
Q  652 cgatcttctttctcttgttgttggatatgtgttgttccactcttcaatttcactcttgatctgtg 716  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  17057468 cgatcttctttctcttgttgttggatctgtgttgttccactcttcaatttcactctcgttctgtg 17057532  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 542
Target Start/End: Complemental strand, 33632573 - 33632536
Alignment:
Q  505 tgagtccatctttgctccatttaacaatactctattta 542  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  33632573 tgagtccatctttgctccatttaataatactccattta 33632536  T

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Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 531 - 648
Target Start/End: Complemental strand, 43493063 - 43492947
Alignment:
Q  531 atactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttgnnnnnnnncacttgtttat 630  Q
    |||||| |||||  ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||        ||||||||||     
T  43493063 atactccatttacccctgttcacttcttagatgtgtgacacatggcaaaaatgaaaccaacggttgagattaaaaggtttg-gaaaaaacacttgtttac 43492965  T
Q  631 tgaataaaaaatcaacat 648  Q
    ||||||||||||||||||    
T  43492964 tgaataaaaaatcaacat 43492947  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 611
Target Start/End: Original strand, 43378621 - 43378677
Alignment:
Q  555 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 611  Q
    |||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||    
T  43378621 tcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggtttg 43378677  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 611
Target Start/End: Complemental strand, 43379504 - 43379448
Alignment:
Q  555 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 611  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| |||||    
T  43379504 tcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaaggtttg 43379448  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 605
Target Start/End: Original strand, 13207395 - 13207445
Alignment:
Q  555 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaa 605  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  13207395 tcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 503 - 586
Target Start/End: Complemental strand, 15668351 - 15668268
Alignment:
Q  503 tatgagtccatctttgctccatttaacaatactctatttagacctgtacacttcttagatgtgtgacacgtggcaaaaatgaaa 586  Q
    |||||||||||||||||||||||||| ||  ||| |||||  ||| | ||||  || ||||||||||| |||||||||||||||    
T  15668351 tatgagtccatctttgctccatttaagaaggctccatttactccttttcactgtttggatgtgtgacatgtggcaaaaatgaaa 15668268  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 527
Target Start/End: Complemental strand, 7338875 - 7338846
Alignment:
Q  498 aaaaatatgagtccatctttgctccattta 527  Q
    ||||||||||||||||||||||||||||||    
T  7338875 aaaaatatgagtccatctttgctccattta 7338846  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 15873904 - 15873839
Alignment:
Q  296 tagtttaagaaacaaatataataagaatattttgaaacttacgtaatc-aaatgcttaaaagtgta 360  Q
    ||||| |||||||||||||||||||||| | |||||||||  |||||| |||| ||||||||||||    
T  15873904 tagttaaagaaacaaatataataagaatttcttgaaacttgtgtaatcaaaatacttaaaagtgta 15873839  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 555 - 605
Target Start/End: Complemental strand, 28584404 - 28584354
Alignment:
Q  555 tcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaa 605  Q
    |||||||| ||||||||||||||||||| ||||||| ||  ||||||||||    
T  28584404 tcttagatatgtgacacgtggcaaaaataaaaccaagggccgagattaaaa 28584354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 611
Target Start/End: Original strand, 20792 - 20845
Alignment:
Q  558 tagatgtgtgacacgtggcaaaaatgaaaccaacggttgagattaaaatgtttg 611  Q
    ||||||||||||| |||| |||||| ||||||| || ||||||||||| |||||    
T  20792 tagatgtgtgacatgtggtaaaaataaaaccaatggctgagattaaaaggtttg 20845  T

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