View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_14 (Length: 414)
Name: NF18856_low_14
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 34255996 - 34255599
Alignment:
| Q |
17 |
atgaaatgtattctgctatgtccaacaagtcaagcaaaattataaactaaaaccgtatatgtcgaaaccgccaattaacctgtattgctgccagttgcag |
116 |
Q |
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| T |
34255996 |
atgaaatgtattctgctatgtccaacaagtcaagcaaaattataaactaaaaccgtatatgtcgaaaccgccaattaacctgtattgctgccagttgcag |
34255897 |
T |
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| Q |
117 |
gagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagcttttcaagttgatcacacaaggttgcattgtttccttccagttttag |
216 |
Q |
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| T |
34255896 |
gagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagcttttcaagttgatcacacaaggttgcattgtttccttccagttttag |
34255797 |
T |
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| Q |
217 |
tgcagaaacaacttcaccccatttcttttcttgatcaacctgcaagaagcattcaatagaatgcagaataacatcttagaaaattcatacaaggatatat |
316 |
Q |
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| T |
34255796 |
tgcagaaacaacttcaccccatttcttttcttgatcaacctgcaagaagcattcaatagaatgcagaataacatcttagaaaattcatacaaggatatat |
34255697 |
T |
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| Q |
317 |
taaattgaacnnnnnnnncatatttggatggataaacatgatctccaaatggaagctgcatannnnnnnggtttcccacatacaggaggaaaccatgt |
414 |
Q |
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| T |
34255696 |
taaattgaacaaaaaaaacatatttggatggataaacatgatctccaaatggaagctacatatttttttggtttcccacatacaggaggaaaccatgt |
34255599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 90 - 278
Target Start/End: Complemental strand, 41552467 - 41552279
Alignment:
| Q |
90 |
attaacctgtattgctgccagttgcaggagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagcttttcaagttgatcacacaa |
189 |
Q |
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| T |
41552467 |
attaacctgttgtggtgccagttgcaggagacctgtagaagtacaatttctcaaattcgtaaagaagataaccatagagattttcaacttgagcacataa |
41552368 |
T |
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| Q |
190 |
ggttgcattgtttccttccagttttagtgcagaaacaacttcaccccatttcttttcttgatcaacctgcaagaagcattcaatagaat |
278 |
Q |
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| T |
41552367 |
ggttgcattgtttccttccagttttagtgcagaaacaacttcactccatttcttttcttggccaacctgtaggaaacattcaagagaat |
41552279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 34377703 - 34377639
Alignment:
| Q |
27 |
ttctgctatgtccaacaagtcaagcaaaattataaactaaaaccgtatatgtcgaaaccgccaat |
91 |
Q |
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| T |
34377703 |
ttctgctatgtccaattagtcaagaaaaattgcaaactaaaatcgtaaatgtagaaactgccaat |
34377639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 37557161 - 37557019
Alignment:
| Q |
103 |
gctgccagttgcaggagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagcttttcaagttgatcacacaaggttgcattgttt |
202 |
Q |
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|||||| |||| |||| ||||||||||||||||| ||||||||||||| |||||| | ||||| |||||| | |||| || | || |||||||||| |
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| T |
37557161 |
gctgccggttggaggaaacctgtagaagtacaatttctcaaatttgtatagaagtgttgcatagatcttttcgacttgagcagataacattgcattgttg |
37557062 |
T |
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| Q |
203 |
ccttccagttttagtgcagaaacaacttcaccccatttctttt |
245 |
Q |
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| T |
37557061 |
ccttccaatttcagtgcagagacaacttcagtccatttgtttt |
37557019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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