View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_low_15 (Length: 408)

Name: NF18856_low_15
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_low_15
NF18856_low_15
[»] chr8 (35 HSPs)
chr8 (17-401)||(25872336-25872720)
chr8 (184-269)||(7026654-7026739)
chr8 (158-266)||(12972753-12972861)
chr8 (172-266)||(10727108-10727202)
chr8 (246-299)||(8558850-8558902)
chr8 (260-299)||(11745671-11745710)
chr8 (178-265)||(13652132-13652219)
chr8 (178-265)||(13710775-13710862)
chr8 (165-268)||(29699158-29699261)
chr8 (172-217)||(6918942-6918987)
chr8 (185-258)||(11494077-11494150)
chr8 (193-266)||(34770824-34770897)
chr8 (191-299)||(10062160-10062267)
chr8 (185-265)||(34788493-34788573)
chr8 (193-268)||(4558730-4558805)
chr8 (260-299)||(20672762-20672801)
chr8 (191-254)||(42597331-42597394)
chr8 (343-393)||(1117408-1117458)
chr8 (319-373)||(7918720-7918774)
chr8 (205-298)||(11000596-11000687)
chr8 (184-266)||(39551274-39551356)
chr8 (262-311)||(8060683-8060732)
chr8 (262-295)||(10075574-10075607)
chr8 (191-268)||(30013149-30013225)
chr8 (262-299)||(31862507-31862544)
chr8 (172-240)||(2364564-2364632)
chr8 (172-216)||(3645931-3645975)
chr8 (262-298)||(9541016-9541052)
chr8 (160-216)||(11477002-11477058)
chr8 (200-268)||(11795031-11795099)
chr8 (177-217)||(11952479-11952519)
chr8 (262-318)||(30389113-30389169)
chr8 (263-318)||(31885061-31885114)
chr8 (278-318)||(37353191-37353231)
chr8 (172-248)||(39392744-39392820)
[»] chr1 (35 HSPs)
chr1 (191-266)||(5756751-5756826)
chr1 (191-259)||(6074404-6074472)
chr1 (172-268)||(7274002-7274098)
chr1 (194-266)||(15360827-15360899)
chr1 (199-265)||(36151571-36151637)
chr1 (184-270)||(44032060-44032146)
chr1 (191-265)||(44928222-44928296)
chr1 (194-299)||(1232924-1233029)
chr1 (185-258)||(20713580-20713653)
chr1 (262-299)||(25479595-25479632)
chr1 (192-265)||(45999354-45999427)
chr1 (172-264)||(4200140-4200232)
chr1 (262-318)||(7136998-7137054)
chr1 (202-266)||(45990123-45990187)
chr1 (197-265)||(48830142-48830210)
chr1 (223-299)||(51190823-51190899)
chr1 (191-270)||(4363693-4363771)
chr1 (248-299)||(23402031-23402082)
chr1 (174-257)||(23895249-23895332)
chr1 (184-255)||(48748659-48748729)
chr1 (200-299)||(50998491-50998589)
chr1 (200-266)||(1393084-1393150)
chr1 (208-318)||(15687086-15687196)
chr1 (267-309)||(33975589-33975631)
chr1 (178-268)||(40304117-40304207)
chr1 (172-210)||(49282825-49282863)
chr1 (183-216)||(10260746-10260779)
chr1 (158-259)||(29793995-29794095)
chr1 (184-265)||(46980195-46980276)
chr1 (222-299)||(47877083-47877160)
chr1 (191-266)||(2152188-2152261)
chr1 (262-318)||(10199408-10199464)
chr1 (343-395)||(33723299-33723351)
chr1 (201-261)||(43420198-43420258)
chr1 (260-296)||(44422711-44422747)
[»] chr5 (17 HSPs)
chr5 (169-266)||(35135727-35135824)
chr5 (200-266)||(12407726-12407792)
chr5 (165-258)||(20982208-20982301)
chr5 (172-268)||(4991006-4991102)
chr5 (186-268)||(28586829-28586911)
chr5 (176-268)||(36542345-36542436)
chr5 (209-268)||(14295454-14295513)
chr5 (200-266)||(4855637-4855703)
chr5 (192-270)||(11835208-11835286)
chr5 (191-261)||(37063144-37063214)
chr5 (185-258)||(6733966-6734038)
chr5 (185-266)||(36539670-36539751)
chr5 (174-255)||(37618915-37618996)
chr5 (172-268)||(42582822-42582919)
chr5 (262-318)||(2568672-2568728)
chr5 (172-212)||(11153532-11153572)
chr5 (200-268)||(16889674-16889742)
[»] chr4 (27 HSPs)
chr4 (185-270)||(54325098-54325183)
chr4 (192-266)||(42321944-42322018)
chr4 (189-252)||(20907101-20907164)
chr4 (174-263)||(41088297-41088384)
chr4 (192-298)||(46013333-46013439)
chr4 (184-265)||(30024623-30024704)
chr4 (221-265)||(927436-927480)
chr4 (184-255)||(4191662-4191734)
chr4 (176-266)||(2980531-2980626)
chr4 (179-266)||(21157686-21157773)
chr4 (193-255)||(51044534-51044597)
chr4 (234-292)||(21952934-21952992)
chr4 (260-306)||(32421271-32421317)
chr4 (192-230)||(42641734-42641772)
chr4 (192-298)||(46247149-46247255)
chr4 (176-266)||(46796933-46797023)
chr4 (184-265)||(23819013-23819093)
chr4 (262-299)||(28614827-28614864)
chr4 (200-265)||(30338658-30338723)
chr4 (172-265)||(43372035-43372128)
chr4 (201-266)||(55870406-55870471)
chr4 (172-216)||(7749197-7749241)
chr4 (206-266)||(10192229-10192289)
chr4 (193-256)||(21683553-21683617)
chr4 (195-259)||(32724053-32724117)
chr4 (170-270)||(44319859-44319958)
chr4 (184-240)||(51555958-51556014)
[»] chr2 (27 HSPs)
chr2 (184-270)||(18962099-18962185)
chr2 (194-270)||(30537588-30537664)
chr2 (191-239)||(44606180-44606228)
chr2 (184-259)||(14209200-14209275)
chr2 (172-259)||(17221612-17221699)
chr2 (172-259)||(35459821-35459908)
chr2 (185-259)||(29729849-29729923)
chr2 (178-268)||(35329882-35329972)
chr2 (193-250)||(5045238-5045295)
chr2 (185-266)||(10143096-10143177)
chr2 (191-264)||(28902007-28902080)
chr2 (185-266)||(37053518-37053599)
chr2 (156-265)||(42817442-42817551)
chr2 (178-266)||(3673724-3673812)
chr2 (200-268)||(5133711-5133779)
chr2 (184-268)||(29430679-29430762)
chr2 (200-299)||(31739991-31740091)
chr2 (190-264)||(14277960-14278035)
chr2 (156-259)||(28803578-28803681)
chr2 (156-259)||(43808471-43808574)
chr2 (193-255)||(7282950-7283012)
chr2 (185-259)||(17952773-17952847)
chr2 (192-230)||(44443251-44443289)
chr2 (185-266)||(5867256-5867337)
chr2 (172-264)||(29429824-29429917)
chr2 (222-266)||(14666509-14666553)
chr2 (188-216)||(35755617-35755645)
[»] chr6 (25 HSPs)
chr6 (158-309)||(9833119-9833270)
chr6 (184-259)||(32386171-32386246)
chr6 (158-259)||(2206487-2206588)
chr6 (175-268)||(10032485-10032578)
chr6 (185-270)||(22742290-22742375)
chr6 (173-265)||(21959640-21959732)
chr6 (201-299)||(29957941-29958040)
chr6 (172-270)||(3155087-3155185)
chr6 (158-216)||(4003715-4003773)
chr6 (185-255)||(31672544-31672614)
chr6 (186-259)||(7713950-7714023)
chr6 (224-269)||(10154184-10154229)
chr6 (158-315)||(31420855-31421012)
chr6 (191-268)||(33911345-33911421)
chr6 (191-270)||(33259746-33259825)
chr6 (197-268)||(33500544-33500615)
chr6 (192-270)||(323742-323820)
chr6 (172-266)||(10452425-10452519)
chr6 (207-268)||(2027469-2027530)
chr6 (185-270)||(3169306-3169391)
chr6 (185-250)||(4420541-4420606)
chr6 (200-265)||(29274295-29274360)
chr6 (187-268)||(281911-281996)
chr6 (185-261)||(8349734-8349810)
chr6 (158-270)||(33068622-33068734)
[»] chr7 (35 HSPs)
chr7 (200-270)||(35536046-35536116)
chr7 (185-270)||(39551609-39551694)
chr7 (192-269)||(1423077-1423153)
chr7 (184-253)||(5276147-5276216)
chr7 (184-268)||(22759109-22759193)
chr7 (166-266)||(27481359-27481459)
chr7 (158-266)||(28340461-28340569)
chr7 (172-230)||(2223060-2223117)
chr7 (192-270)||(2894748-2894826)
chr7 (319-401)||(22387807-22387889)
chr7 (184-262)||(45593788-45593866)
chr7 (193-258)||(27378901-27378965)
chr7 (250-299)||(47134776-47134825)
chr7 (201-265)||(5006575-5006639)
chr7 (183-255)||(7244624-7244696)
chr7 (184-240)||(29574692-29574748)
chr7 (192-268)||(30133980-30134056)
chr7 (185-268)||(1413141-1413224)
chr7 (173-216)||(27389295-27389338)
chr7 (200-263)||(31341133-31341196)
chr7 (184-266)||(46081956-46082039)
chr7 (191-230)||(46223173-46223212)
chr7 (195-265)||(23918891-23918961)
chr7 (200-266)||(28613599-28613665)
chr7 (193-259)||(33894555-33894620)
chr7 (158-256)||(47003984-47004082)
chr7 (198-259)||(1417201-1417262)
chr7 (158-239)||(8445183-8445264)
chr7 (197-266)||(31338444-31338513)
chr7 (175-216)||(36598436-36598477)
chr7 (185-266)||(49060464-49060545)
chr7 (172-216)||(1431423-1431467)
chr7 (200-268)||(2048104-2048171)
chr7 (184-268)||(27548186-27548270)
chr7 (222-266)||(30456515-30456559)
[»] chr3 (24 HSPs)
chr3 (184-265)||(32703061-32703142)
chr3 (185-257)||(38462205-38462277)
chr3 (158-266)||(43116493-43116601)
chr3 (193-268)||(20192669-20192744)
chr3 (194-265)||(36646448-36646519)
chr3 (184-255)||(40122828-40122899)
chr3 (173-255)||(3757960-3758042)
chr3 (193-267)||(24605080-24605154)
chr3 (185-270)||(22232750-22232835)
chr3 (185-261)||(33307650-33307726)
chr3 (184-259)||(27792795-27792870)
chr3 (192-258)||(36783407-36783474)
chr3 (184-263)||(51278225-51278304)
chr3 (185-259)||(41028923-41028997)
chr3 (205-259)||(49586988-49587042)
chr3 (262-299)||(6483815-6483852)
chr3 (337-394)||(25459548-25459605)
chr3 (185-266)||(28779280-28779361)
chr3 (262-299)||(34924557-34924594)
chr3 (222-266)||(31337466-31337510)
chr3 (262-318)||(33883750-33883806)
chr3 (186-270)||(36189491-36189575)
chr3 (185-217)||(49772782-49772814)
chr3 (204-268)||(52618946-52619010)
[»] scaffold0590 (1 HSPs)
scaffold0590 (186-259)||(1146-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (186-259)||(2756-2829)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 25872720 - 25872336
Alignment:
Q  17 caatggggttcttcacttaggtgtgagggatggaagtctagggctgatgaagatactggtaattgatttcaacattttctaattttaagtttagaattct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25872720 caatggggttcttcacttaggtgtgagggatggaagtctagggctgatgaagatactggtaattgatttcaacattttctaattttaagtttagaatttt 25872621  T
Q  117 gttgttgctgttgttgacttgggctatggttggataattgtttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  25872620 gttgttgatgttgttgacttgggctatgtttggataattgtttaatttagtgctcatagcataagtgtttatcgtataagtgcttacgtataagctattt 25872521  T
Q  217 tcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25872520 tcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgt 25872421  T
Q  317 cagttttcataggctgtcctaaacaatctcacaagtgtgtatgctagttgataagttctagttagtcaatccaaacaggcctttg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25872420 cagttttcataggctgtcctaaacaatctcacaagtgtgtatgctagttgataagttcaagttagtcaatccaaacaggcctttg 25872336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 269
Target Start/End: Original strand, 7026654 - 7026739
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagcta 269  Q
    |||||| |||||||| ||||| |||||||| | | || ||||||||| | ||||||||||| |||||||||||||| |||||||||    
T  7026654 tttatcatataagtgcttatgcataagctactgttataacaaaagataaaataaagtaaaattgttttcatataaggtataagcta 7026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 12972753 - 12972861
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||| || ||| ||||||||||  |||||| |||||||| |||||||||||||||||  || ||| ||||||| ||||| | |||||| |||||| ||    
T  12972753 ttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctatttcaataacagaagatgaaataaaattaaactggtttcatgta 12972852  T
Q  258 agttataag 266  Q
    || ||||||    
T  12972853 agctataag 12972861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 10727108 - 10727202
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||||||| || ||| |||||||| ||||| |||||||||||  ||  |||||||||| ||||| | ||| |||||||| ||||||||||||    
T  10727108 atagcataagtgttcatcatataagtgcttatgcataagctatttctatagcaaaagatgaaataaattcaaagtgttttcacataagttataag 10727202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 8558850 - 8558902
Alignment:
Q  246 tgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||||||    
T  8558850 tgttttcatataagttataagctattat-gtgagcttatgaaaataagctgaaa 8558902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 11745710 - 11745671
Alignment:
Q  260 ttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  11745710 ttataagctatcctagtgagcttatgaaactaagctgaaa 11745671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 13652132 - 13652219
Alignment:
Q  178 taagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||| |||||| | |||||| |||||||||||||||||  ||  |||||||||  || |||| ||| ||||||||||||||||||||    
T  13652132 taagtgtttatcatctaagtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatataagttataa 13652219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 13710775 - 13710862
Alignment:
Q  178 taagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||| |||||| | |||||| |||||||||||||||||  ||  |||||||||  || |||| ||| ||||||||||||||||||||    
T  13710775 taagtgtttatcatctaagtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatataagttataa 13710862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 29699158 - 29699261
Alignment:
Q  165 agtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttata 264  Q
    |||||| ||||||||| | |||||| ||||| || ||||||| ||| |||||  || ||||||||| | ||||||| ||| |||| |||| |||||||||    
T  29699158 agtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaaaatgttgtcatctaagttata 29699257  T
Q  265 agct 268  Q
    ||||    
T  29699258 agct 29699261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 6918942 - 6918987
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctatttt 217  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||||    
T  6918942 atagcataagtgtttatcatataagtgcttatgtataagctatttt 6918987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 11494077 - 11494150
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataa 258  Q
    ||||| |||||||| || |||||| | ||||||||| ||||||||| | ||||||| ||||| |||||||||||    
T  11494077 ttatcatataagtgcttttgtatatgttattttcataacaaaagataacataaagtcaaacttttttcatataa 11494150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 34770824 - 34770897
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||| ||||||| || |||||| ||||||||||||| | ||||||| ||| ||||||||| |||| ||||||    
T  34770824 taagtgcttatgtaaaaactatttccattacaaaagataaaataaagtcaaattgttttcatttaagctataag 34770897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 10062267 - 10062160
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaat 290  Q
    |||| ||||||||||||||| |||||  ||  |||||||  | ||||||| ||||   |||| |||||| ||||||||||||| ||||| ||||| ||||    
T  10062267 tatatgtgtttatgtataagttatttctataccaaaagaaaagataaagttaaac-catttcctataagctataagctatccttgtgagtttatgcaaat 10062169  T
Q  291 aagctgaaa 299  Q
    |||||||||    
T  10062168 aagctgaaa 10062160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 265
Target Start/End: Complemental strand, 34788573 - 34788493
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||| ||||| || ||| |||||||||||||| || || |||||| | ||||||| ||||||||| |||||||| |||||    
T  34788573 ttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagctataa 34788493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 4558730 - 4558805
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||||||||||||||||  || | ||||||| | ||||||| ||| | |||||||||| | ||||||||    
T  4558730 taagtgtttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagct 4558805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 20672762 - 20672801
Alignment:
Q  260 ttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  20672762 ttataagctatcctggagagcttatgaaaataagctgaaa 20672801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 42597331 - 42597394
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcat 254  Q
    |||||||  |||||||||||||||||  || ||||||||| | ||||||||||| |||||||||    
T  42597331 tataagtacttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcat 42597394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 393
Target Start/End: Original strand, 1117408 - 1117458
Alignment:
Q  343 tctcacaagtgtgtatgctagttgataagttctagttagtcaatccaaaca 393  Q
    |||||||||||| |||||||||  |||||||| ||| ||||||||||||||    
T  1117408 tctcacaagtgtttatgctagtatataagttcaagtaagtcaatccaaaca 1117458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 7918774 - 7918720
Alignment:
Q  319 gttttcataggctgtcctaaacaatctcacaagtgtgtatgctagttgataagtt 373  Q
    ||||||||| ||| ||| ||||| |||||||||||| ||||||||| ||||||||    
T  7918774 gttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagtt 7918720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 11000687 - 11000596
Alignment:
Q  205 tataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaa 298  Q
    |||||||||||| ||| ||||||||| | ||||||| ||| |||||||  ||||| ||||||  |||||   ||||||||| ||||||||||||    
T  11000687 tataagctatttccataacaaaagataaaataaagtcaaattgttttcgaataagctataag--atcctgaagagcttatggaaataagctgaa 11000596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 39551356 - 39551274
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||| ||||||||||||||||||| ||| || ||| | ||||||| | ||||||  ||||||| |||||| ||| ||||||    
T  39551356 tttatcatataagtgtttatgtataacctacttccataataaaagataaaataaagctaaactgtcttcatacaagctataag 39551274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 8060683 - 8060732
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaa 311  Q
    |||||| ||||||| ||||||||| ||||||||||||| ||| |||||||    
T  8060683 ataagcaatcctagagagcttatggaaataagctgaaaataacttatgaa 8060732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 10075607 - 10075574
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagct 295  Q
    |||||||||||||| |||||||||||||||||||    
T  10075607 ataagctatcctagagagcttatgaaaataagct 10075574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 30013149 - 30013225
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||||| |||||| ||||||||||| || ||||||| | | || |||| ||||||||| |||||||| ||||||||    
T  30013149 tataagtgcttatgtttaagctatttt-ataacaaaaggtcaaattaagtcaaactgtttccatataagctataagct 30013225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 31862507 - 31862544
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  31862507 ataagttatcctagagagcttatgaaaataagctgaaa 31862544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 2364632 - 2364564
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagt 240  Q
    ||||||||||| |||||| ||||| | |||||||||| |||||||| ||  |||||||| | |||||||    
T  2364632 atagcataagtgtttatcatataactatttatgtatacgctatttttatagcaaaagataaaataaagt 2364564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 3645975 - 3645931
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    ||||||||||| |||||| |||||||| || ||||||||||||||    
T  3645975 atagcataagtgtttatcatataagtgcttgtgtataagctattt 3645931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 9541052 - 9541016
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaa 298  Q
    |||||||||||||| |||||| |||||||||||||||    
T  9541052 ataagctatcctagagagcttttgaaaataagctgaa 9541016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 11477058 - 11477002
Alignment:
Q  160 aatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    |||| |||||| ||||||||||  |||||| |||||||| | |||||||||||||||    
T  11477058 aattaagtgcttatagcataagcttttatcatataagtgctaatgtataagctattt 11477002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 11795031 - 11795099
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||||| |||  || |||||| ||   ||||||| | |||||||||||||||||||||||||    
T  11795031 ttatgtataagctttttctatgacaaaacatacaataaagtcacactgttttcatataagttataagct 11795099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 11952519 - 11952479
Alignment:
Q  177 ataagtctttatcgtataagtgtttatgtataagctatttt 217  Q
    |||||| |||||| ||||||||||||||||||||| |||||    
T  11952519 ataagtttttatcatataagtgtttatgtataagccatttt 11952479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 30389113 - 30389169
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgtca 318  Q
    ||||||| |||||| || ||||||||||||||||||||  || ||||||| ||||||    
T  30389113 ataagctttcctagagaacttatgaaaataagctgaaaacaacttatgaacatgtca 30389169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 31885114 - 31885061
Alignment:
Q  263 taagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgtca 318  Q
    ||||||||||||| |||||||  |||||||||||||| ||  ||||||||||||||    
T  31885114 taagctatcctagagagctta--aaaataagctgaaaatagcttatgaatatgtca 31885061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 37353231 - 37353191
Alignment:
Q  278 agcttatgaaaataagctgaaattaatttatgaatatgtca 318  Q
    ||||| |||||||||||||||| || |||||||||||||||    
T  37353231 agcttttgaaaataagctgaaaatagtttatgaatatgtca 37353191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 39392820 - 39392744
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgt 248  Q
    |||||||||||  ||||| ||||||||  ||||||||| ||||||  || ||||||||| | ||||||| |||||||    
T  39392820 atagcataagtgcttatcatataagtggctatgtataaactatttctataacaaaagataaaataaagtcaaactgt 39392744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 5756826 - 5756751
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||||| | |||||||||||||  || ||||||||||||||||||| ||||||||||||||||| |||||||    
T  5756826 tataagtgttcacgtataagctatttctataacaaaagatgatataaagttaaactgttttcatataaattataag 5756751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 6074404 - 6074472
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||||||| | |||||||||||||  || ||||||||||||||||||| ||||||||||||||||||    
T  6074404 tataagtgttcacgtataagctatttctataacaaaagatgatataaagttaaactgttttcatataag 6074472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 7274098 - 7274002
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||||||||  ||||| ||||| || ||||||||| | |||||| || ||||||||||| ||||||| ||| |||||||||| ||||||||||||    
T  7274098 atagcataagtgcttatcatataaatgcttatgtatatgttatttttataacaaaagatgaaataaagtcaaattgttttcatacaagttataagct 7274002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 15360827 - 15360899
Alignment:
Q  194 aagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||||||||| || |||||  || ||||||||| | ||||||| |||||||||||||||||| ||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataag 15360899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 36151637 - 36151571
Alignment:
Q  199 tttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||||||||||||||||  || ||||||||| | ||||||| ||| ||||||| ||||||||||||    
T  36151637 tttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataagttataa 36151571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 44032146 - 44032060
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||| |||||||||||||||||||||  |||  || ||||||| | | ||||||| ||| |||||||||||||| ||||| ||||    
T  44032146 tttatcatataagtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactat 44032060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 44928296 - 44928222
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||||| |||||||||||||||||   || |||||||| | ||||||| || ||||||||||||||| |||||    
T  44928296 tataagtgcttatgtataagctatttcagttgcaaaagataagataaagtcaagctgttttcatataagctataa 44928222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 299
Target Start/End: Complemental strand, 1233029 - 1232924
Alignment:
Q  194 aagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataag 293  Q
    ||||||||||| ||||||| |||| || |||||| || | ||||||| ||| | ||||| |||||| || |||||||| | | ||  |||||||||||||    
T  1233029 aagtgtttatgcataagctgtttttataacaaaacataaaataaagttaaattattttcgtataagataaaagctatcttggagaatttatgaaaataag 1232930  T
Q  294 ctgaaa 299  Q
    ||||||    
T  1232929 ctgaaa 1232924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 20713580 - 20713653
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataa 258  Q
    ||||||||||| |||||||||||||| |||||  || ||||  ||| |||||||||| ||||||||| ||||||    
T  20713580 ttatcgtataaatgtttatgtataagttatttctataacaatcgataatataaagtacaactgtttttatataa 20713653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 25479595 - 25479632
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25479595 ataagctatcctagagagcttatgaaaataagctgaaa 25479632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 265
Target Start/End: Complemental strand, 45999427 - 45999354
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||||| | |||||||||||||||  || ||||||||| | ||||||| |||||| ||||||||||| |||||    
T  45999427 ataagtgctcatgtataagctatttctataacaaaagataagataaagtcaaactgctttcatataagctataa 45999354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 4200140 - 4200232
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttata 264  Q
    ||||||||||   ||||| | ||||||||||| |||||| |||||| || ||||||||| | ||||||| ||  |||||||||||||| ||||    
T  4200140 atagcataagcacttatcatctaagtgtttatatataagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctata 4200232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 7137054 - 7136998
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgtca 318  Q
    |||||||||| | | || |||||||||||||||||||| ||| ||||||||||||||    
T  7137054 ataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtca 7136998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 45990187 - 45990123
Alignment:
Q  202 atgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||| |||||||| ||  |||||||| | ||||||||||| |||||||||||||| ||||||    
T  45990187 atgtatatgctatttttatatcaaaagataaaataaagtaaaattgttttcatataagctataag 45990123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 48830210 - 48830142
Alignment:
Q  197 tgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||||||||||| |||||  ||||| |||||| | ||||||| ||||| |||||||||||| |||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataa 48830142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 51190823 - 51190899
Alignment:
Q  223 caaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||| | ||||||| ||| ||||||  |||||||||||||||||| |   || ||||||||||||||||||||    
T  51190823 caaaagataaaataaagttaaattgtttttgtataagttataagctatcttgaagaacttatgaaaataagctgaaa 51190899  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 4363771 - 4363693
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||||| |||||||||  ||||||| || ||||||||| | |||| || |||||||||||||||||| ||||| ||||    
T  4363771 tataagtgcttatgtatactctatttt-ataacaaaagattaaataatgtcaaactgttttcatataagctataacctat 4363693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 23402031 - 23402082
Alignment:
Q  248 ttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||| ||||||||||||||| | | ||||||||| |||||||||||||    
T  23402031 ttttcatacaagttataagctatcatcgagagcttatggaaataagctgaaa 23402082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 23895249 - 23895332
Alignment:
Q  174 agcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||||| | ||||| |||||||  |||||||||||||||||  || ||||||||| | ||||| | |||||||| |||||||    
T  23895249 agcataagcccttatcatataagttattatgtataagctatttctataacaaaagataaaataaattcaaactgttctcatata 23895332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 48748729 - 48748659
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    |||||| |||| ||| |||||||||||||||||  || ||||||||||| ||||||| ||| ||||||||||    
T  48748729 tttatcatatatgtgcttatgtataagctatttctat-acaaaagatgaaataaagttaaattgttttcata 48748659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 50998491 - 50998589
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||||||||||||   | ||||||||| | | ||| | |||||  ||||||||||| |||| ||||||||  | ||||||||||||||||||||||    
T  50998491 ttatgtataagctatttctgtaacaaaagataaaacaaaatcaaactactttcatataagctataggctatcctgat-agcttatgaaaataagctgaaa 50998589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 1393150 - 1393084
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||| ||||||||||||  || ||||||| | | |||||||||| |||||||||| |||||||||||    
T  1393150 ttatatataagctatttatataacaaaagttaaaataaagtaaatctgttttcatgtaagttataag 1393084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 15687196 - 15687086
Alignment:
Q  208 aagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaattaattta 307  Q
    |||||||||  || |||||| || | ||||||| ||| ||||||| |||||| || ||||| | | || |||||||||| ||||||||||||  ||||||    
T  15687196 aagctatttctataacaaaatataaaataaagttaaattgttttcgtataagctacaagctctgccagagagcttatgacaataagctgaaaacaattta 15687097  T
Q  308 tgaatatgtca 318  Q
    || | ||||||    
T  15687096 tggacatgtca 15687086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 33975589 - 33975631
Alignment:
Q  267 ctatcctagtgagcttatgaaaataagctgaaattaatttatg 309  Q
    ||||||||| ||||||||||||||||||||||| || ||||||    
T  33975589 ctatcctagagagcttatgaaaataagctgaaaatagtttatg 33975631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 40304207 - 40304117
Alignment:
Q  178 taagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||| |||||| ||| | || ||| |||||||||||||  || ||||||||| | ||||| | | | |||||||||||||||||||||||    
T  40304207 taagtgtttatcatattattgcttaggtataagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagct 40304117  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 49282863 - 49282825
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataag 210  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  49282863 atagcataagtgcttatcgtataagtgtttatgtataag 49282825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 10260779 - 10260746
Alignment:
Q  183 ctttatcgtataagtgtttatgtataagctattt 216  Q
    |||||||||||||||||||||||| |||||||||    
T  10260779 ctttatcgtataagtgtttatgtacaagctattt 10260746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 29794095 - 29793995
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||| || ||| ||||||||||| ||| || |||| ||||||||||||| ||||||||  | ||||||||| | || |||| ||| |||||||| |||    
T  29794095 ttaattaagcgcttatagcataagtgtttttcatatatgtgtttatgtataggctatttttgtaacaaaagataaaat-aagtcaaattgttttcaaata 29793997  T
Q  258 ag 259  Q
    ||    
T  29793996 ag 29793995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 46980276 - 46980195
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||| ||||||||  |||| ||||| | |||| ||  |||||||| | ||||||  ||||||||||||||||||||||||    
T  46980276 tttatcatataagtgcatatgcataagttgtttttatatcaaaagataaaataaagacaaactgttttcatataagttataa 46980195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 299
Target Start/End: Original strand, 47877083 - 47877160
Alignment:
Q  222 acaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    ||||||||| | ||||| | ||| |||||||||||||  ||||||||||  | |  ||||||||||||||||||||||    
T  47877083 acaaaagataaaataaaatcaaattgttttcatataaactataagctattatggaaagcttatgaaaataagctgaaa 47877160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 266
Target Start/End: Original strand, 2152188 - 2152261
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||| |||||||||||||||||  || ||  ||||| || |||||| ||||| |||| ||||||||||||||    
T  2152188 tataagtgcttatgtataagctatttctatgac--aagataatgtaaagtgaaactattttaatataagttataag 2152261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 10199464 - 10199408
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgtca 318  Q
    |||||||||  ||| |||||||||||||||||||||||  || ||||||| ||||||    
T  10199464 ataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtca 10199408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 33723351 - 33723299
Alignment:
Q  343 tctcacaagtgtgtatgctagttgataagttctagttagtcaatccaaacagg 395  Q
    |||||||||||| |||| |||| ||||||||| | | ||||||||||||||||    
T  33723351 tctcacaagtgtttatggtagtagataagttcaaataagtcaatccaaacagg 33723299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 43420198 - 43420258
Alignment:
Q  201 tatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagtt 261  Q
    |||||||||||||||| ||| || |||||| | ||||||| ||||| |||| |||||||||    
T  43420198 tatgtataagctatttccataacgaaagataaaataaagtcaaactttttttatataagtt 43420258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 44422711 - 44422747
Alignment:
Q  260 ttataagctatcctagtgagcttatgaaaataagctg 296  Q
    |||||||||||||| | ||||||||||||||||||||    
T  44422711 ttataagctatcctggagagcttatgaaaataagctg 44422747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 35135824 - 35135727
Alignment:
Q  169 ctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||||||||||  ||| | |||||||||||||||||||| |||||  || ||||||||| | ||||||| ||||| |||||||||||| ||||||    
T  35135824 ctcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataag 35135727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 12407792 - 12407726
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||||||||||||  || ||||||||| | |||||||||| |||||||||| |||||||||||    
T  12407792 ttatgtataagctatttctataacaaaagataaaataaagtaaatctgttttcatgtaagttataag 12407726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 20982301 - 20982208
Alignment:
Q  165 agtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataa 258  Q
    |||||| |||||||||||  ||||| |||||||| |||||||||||||||||  || ||||| ||| | ||||||| || | ||||||||||||    
T  20982301 agtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 4991102 - 4991006
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||   ||||| ||||||||||| ||||||||||||||| || ||||||||| | ||||  | ||  | |||||||||||||||||||||    
T  4991102 atagcataagcgattatcatataagtgtttgtgtataagctatttttataacaaaagataacataagatcaatttattttcatataagttataagct 4991006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 28586911 - 28586829
Alignment:
Q  186 tatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||| |||| ||| |||||||||  ||||||  || ||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  28586911 tatcatatatgtggttatgtatacactatttctataacaaaagataaaataaagtcaaactgttttcatataaattataagct 28586829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 268
Target Start/End: Complemental strand, 36542436 - 36542345
Alignment:
Q  176 cataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||| |||||| ||||||||||||||||| ||||||||  || ||||| |||  ||| || | |||||||| ||||||||| ||||||||    
T  36542436 cataagtatttatcatataagtgtttatgtat-agctatttctataacaaacgatattatcaaatcaaactgttctcatataagctataagct 36542345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 14295454 - 14295513
Alignment:
Q  209 agctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||  || ||||||||| | ||||||| |||||||||||||||||| ||||||||    
T  14295454 agctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagct 14295513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 4855637 - 4855703
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||| ||||||||| || |||||| || | ||||||| ||| |||| ||||||||||||||||    
T  4855637 ttatgtattagctatttttataacaaaaaataaaataaagttaaattgttatcatataagttataag 4855703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 11835208 - 11835286
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||||| |  ||||||||| ||||    
T  11835208 ataagtgtttatgtataaaccatttttataacaaaagataaaataaagttaaattgttttcgttgaagttataacctat 11835286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 37063214 - 37063144
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagtt 261  Q
    ||||| || |||||||||| ||||||  || ||||||||| | ||||||| ||||| ||||||||||||||    
T  37063214 tataaatgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataagtt 37063144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 6734038 - 6733966
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataa 258  Q
    ||||| |||||||||||||| |||| ||||||| || || |||||| | ||||||| ||| |||||||||||||    
T  6734038 ttatcatataagtgtttatgcataatctatttttataacgaaagataaaataaagt-aaattgttttcatataa 6733966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 36539670 - 36539751
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||| |||||||| |||||| ||||||||||   |  |||||||| | ||||||| || ||||||||||||||| ||||||    
T  36539670 ttatcatataagtgcttatgtgtaagctatttgtttatcaaaagataaaataaagtcaacctgttttcatataagctataag 36539751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 37618996 - 37618915
Alignment:
Q  174 agcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    ||||||||| ||||||||||||||| ||||| | |||||||||  |||| ||||||| | || || | ||||||||| ||||    
T  37618996 agcataagtgtttatcgtataagtgcttatgcaaaagctatttctattataaaagataaaatgaaatcaaactgtttacata 37618915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 42582822 - 42582919
Alignment:
Q  172 atagcataagtctttatcgta-taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||  |||||| || |||| | ||||||||||||||||| ||| | ||||||||| ||||||| ||| ||| ||| | |||| ||||||||    
T  42582822 atagcataagcgtttatcataataagcgcttatgtataagctatttccatgataaaagatgaaataaagttaaattgtgttcgtttaaggtataagct 42582919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 2568672 - 2568728
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgtca 318  Q
    |||||||||| | | ||||| ||||||||||||| ||| ||| ||||||||||||||    
T  2568672 ataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtca 2568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 11153572 - 11153532
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagct 212  Q
    |||||||||| ||||||| |||||||| |||||||||||||    
T  11153572 atagcataagactttatcatataagtgcttatgtataagct 11153532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 16889674 - 16889742
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||||||||| ||| ||||||||| |  | |||| |||||||||| ||| ||| ||||||||    
T  16889674 ttatgtataagctatttccataacaaaagataaacttaagtcaaactgtttttatagaagctataagct 16889742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 54325183 - 54325098
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    ||||| |||||||| || ||||||| ||||||  |||||||||||| | ||||||| |||||||||||||||||| ||||||||||    
T  54325183 ttatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagctataagctat 54325098  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 42322018 - 42321944
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||||||||| |||||||||||| || ||||| ||| | ||||||| ||| ||||||||||||| |||||||    
T  42322018 ataagtgtttatgaataagctatttttataacaaatgataaaataaagtcaaattgttttcatataaattataag 42321944  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 20907101 - 20907164
Alignment:
Q  189 cgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttc 252  Q
    ||||||||||||||||||||||||||||  || | ||||||| | ||||||| |||||||||||    
T  20907101 cgtataagtgtttatgtataagctatttgtataagaaaagataaaataaagtgaaactgttttc 20907164  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Original strand, 41088297 - 41088384
Alignment:
Q  174 agcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttat 263  Q
    ||||||| | ||| || |||||||| |||||||||| |||||||||  ||||||||| | ||||||||||| |||||  |||||||||||    
T  41088297 agcataaatatttttcatataagtgcttatgtataaactattttcacaacaaaagataaaataaagtaaaattgttt--atataagttat 41088384  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 298
Target Start/End: Complemental strand, 46013439 - 46013333
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaata 291  Q
    |||||||||||||| ||| ||||||     ||||||||| | ||||||| |||||||||| |||||||||||||| ||||||   ||||||| ||| |||    
T  46013439 ataagtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataagttataagttatcctgaagagcttaagaatata 46013340  T
Q  292 agctgaa 298  Q
    || ||||    
T  46013339 agttgaa 46013333  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 30024623 - 30024704
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||| |||||||  ||||| ||||| |||||  || ||||||||| | ||||||||||| |||||||||||||| |||||    
T  30024623 tttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 927436 - 927480
Alignment:
Q  221 tacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||    
T  927436 tacaaaagatgaaataaagtcaaactgttttcatataagctataa 927480  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 4191662 - 4191734
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagat-gatataaagtaaaactgttttcata 255  Q
    |||||| |||||||| |||||||||||||||||  || |||||||||  | ||||||| ||||||||||||||    
T  4191662 tttatcatataagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttcata 4191734  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 2980626 - 2980531
Alignment:
Q  176 cataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatg-----atataaagtaaaactgttttcatataagttataag 266  Q
    ||||||| |||||| |||||||| |||||||||||||||||  || |||||| |||     | ||||||| ||||| |||||||| ||||||||||    
T  2980626 cataagtgtttatcatataagtgcttatgtataagctatttctataacaaaaaatgaaacaaaataaagtcaaactattttcatacaagttataag 2980531  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 21157686 - 21157773
Alignment:
Q  179 aagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||| |||||| |||||||| |||||||| ||||||||| || |||||  || |  |||||| ||||||||||||| |||| ||||||    
T  21157686 aagtgtttatcatataagtgcttatgtatcagctattttgataacaaagtataaactaaagtcaaactgttttcatgtaagctataag 21157773  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 51044597 - 51044534
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaac-tgttttcata 255  Q
    ||||||||||||||||||||||||  || ||||||||| | ||||||| |||| ||||||||||    
T  51044597 taagtgtttatgtataagctatttctataacaaaagataaaataaagtcaaacttgttttcata 51044534  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 21952934 - 21952992
Alignment:
Q  234 ataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataa 292  Q
    ||||||| ||| |||||||||||||| ||||||||||||||  ||||||| | ||||||    
T  21952934 ataaagtcaaattgttttcatataagctataagctatcctatagagcttaaggaaataa 21952992  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 32421317 - 32421271
Alignment:
Q  260 ttataagctatcctagtgagcttatgaaaataagctgaaattaattt 306  Q
    |||||||||||| ||| ||| ||||||||||||||||||| ||||||    
T  32421317 ttataagctatcttagagaggttatgaaaataagctgaaaataattt 32421271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 42641772 - 42641734
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagat 230  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  42641772 ataagtgtttatgtataagctatttccataacaaaagat 42641734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 46247149 - 46247255
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaata 291  Q
    |||||||||||||| ||| ||||||     ||||||||| | ||||||| |||||||||| |||||| ||||||| ||||||   ||||||| ||| |||    
T  46247149 ataagtgtttatgtgtaaactatttctggaacaaaagataaaataaagtcaaactgtttttatataaattataagttatcctgaagagcttaagaatata 46247248  T
Q  292 agctgaa 298  Q
    || ||||    
T  46247249 agttgaa 46247255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 46796933 - 46797023
Alignment:
Q  176 cataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||  ||||| |||||||  ||||| ||||||||||||||| ||||| ||| | ||||| | ||  ||||| |||||||||||||||    
T  46796933 cataagtgcttatcatataagttcttatgcataagctattttcataacaaacgataaaataaattcaatatgtttccatataagttataag 46797023  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 23819013 - 23819093
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||| || ||||||||||||||||| ||||| ||| |||||  || | ||  ||| ||||||||||||||||||||||||    
T  23819013 tttatcatacaagtgtttatgtataagttatttccataacaaat-ataaaatgtagtcaaactgttttcatataagttataa 23819093  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 28614864 - 28614827
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||||||||| || ||||||||||||||||||||    
T  28614864 ataagctatcctagagaacttatgaaaataagctgaaa 28614827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 30338723 - 30338658
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||||||| ||||||  || |||||||||   ||||||| |||||||||||||||||| |||||    
T  30338723 ttatgtataaactatttctataacaaaagatagaataaagttaaactgttttcatataagctataa 30338658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 265
Target Start/End: Complemental strand, 43372128 - 43372035
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||||||||  |||| | ||||||||||||   ||||| |||||| || ||||||||| | ||| ||| |||||||||| ||||||| |||||    
T  43372128 atagcataagcatttaccatataagtgtttaaacataaggtatttttataacaaaagataaaatacagtcaaactgtttttatataagctataa 43372035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 55870471 - 55870406
Alignment:
Q  201 tatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||||| | ||||| || ||||||||| | ||||||| |||||||||||| ||||| ||||||    
T  55870471 tatgtataatccatttttataacaaaagatcaaataaagtcaaactgttttcacataagctataag 55870406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 7749241 - 7749197
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    ||||||||||| |||| | |||||||||||||||||| |||||||    
T  7749241 atagcataagtgtttaccatataagtgtttatgtatacgctattt 7749197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 10192229 - 10192289
Alignment:
Q  206 ataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||| ||||||| || |||||||||   ||||||| ||| |||||||||||||||||||||    
T  10192229 ataaactatttttataacaaaagatagaataaagtcaaattgttttcatataagttataag 10192289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 21683617 - 21683553
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaag-taaaactgttttcatat 256  Q
    ||||||||||||||||| ||||||  || ||||||||| | |||||| |||||| ||||||||||    
T  21683617 taagtgtttatgtataaactatttctataacaaaagataagataaagttaaaacagttttcatat 21683553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 32724053 - 32724117
Alignment:
Q  195 agtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||| |||||| ||| ||||||  |||||||||||| | ||||||| ||||| ||||||||||||    
T  32724053 agtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataag 32724117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 44319859 - 44319958
Alignment:
Q  170 tcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagcta 269  Q
    ||||||||||||   ||||| |||||||| | |||||||| ||||||  || | ||||||| | |||||||  ||||||||||||||||| || ||||||    
T  44319859 tcatagcataagcacttatcatataagtgctcatgtataaactatttctataa-aaaagataaaataaagtcgaactgttttcatataagctacaagcta 44319957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 51556014 - 51555958
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagt 240  Q
    |||||| |||||||| |||||||||||||||| | || ||||||||| | |||||||    
T  51556014 tttatcatataagtgcttatgtataagctattattataacaaaagataaaataaagt 51555958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 18962185 - 18962099
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||| | |||||| |||||||| ||||||||| || ||||||||| | ||||||| |||||||||||||||||| ||||| ||||    
T  18962185 tttatcatgtaagtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctataaactat 18962099  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 30537664 - 30537588
Alignment:
Q  194 aagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||||||| | ||||||||||  || || |||||| ||||||||| |||| ||||||||||||| ||||||||||    
T  30537664 aagtgtttatatgtaagctatttctataactaaagatcatataaagtcaaacagttttcatataagctataagctat 30537588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 44606228 - 44606180
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaag 239  Q
    |||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  44606228 tataagtgtttatgtataagctattttcataacaaaagataaaataaag 44606180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 14209200 - 14209275
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||| ||||||||||| ||| ||||||||||  || ||||||||| | ||||| | ||||||||||||||||||    
T  14209200 tttatcatataagtgtttctgtctaagctatttcaataacaaaagataaaataaattcaaactgttttcatataag 14209275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 17221699 - 17221612
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||||||| ||||||| | ||||||||||||||||| ||| ||| || ||||||| | | ||||||| ||| |||| |||||||||    
T  17221699 atagcataagcctttatcatttaagtgtttatgtataaactagtttaatgacaaaaggtaaaataaagtcaaattgttctcatataag 17221612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 35459821 - 35459908
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    ||||||||||| |||||| |||||||| || ||||||||||||||  ||  |||||||| | ||||||| ||| ||||||| ||||||    
T  35459821 atagcataagtgtttatcatataagtgattttgtataagctatttgtataccaaaagataaaataaagtcaaattgttttcgtataag 35459908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 29729849 - 29729923
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||||||||||| ||| ||||| |||||||| || ||||||||| |  |||||| |||||||||||| |||||    
T  29729849 ttatcgtataagtgcttacgtatatgctatttttataacaaaagataaattaaagtgaaactgttttcacataag 29729923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 35329972 - 35329882
Alignment:
Q  178 taagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||| |||||| |||||||||||||| |||| |||||| ||| ||| ||||| | ||||||| || ||| ||||| ||||| ||||||||    
T  35329972 taagtgtttatcatataagtgtttatgcataaactatttccataacataagataaaataaagtcaagctgctttcacataagctataagct 35329882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 5045295 - 5045238
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttt 250  Q
    ||||||||||||||||||||||||| || ||||||||| | ||||||| || ||||||    
T  5045295 taagtgtttatgtataagctatttttataacaaaagataaaataaagtcaagctgttt 5045238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 10143096 - 10143177
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||| ||||||| ||||||||||| |||||  || ||||||||| | || |||| |||||||||| ||||||| ||||||    
T  10143096 ttatcgaataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataag 10143177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 28902007 - 28902080
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttata 264  Q
    |||||||| |||||||||||||||||| || ||| ||| | | ||||| | |||||||||||||||||| ||||    
T  28902007 tataagtgcttatgtataagctatttttataacataagttaaaataaaattaaactgttttcatataagctata 28902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 37053518 - 37053599
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||| |||||||| |||||||||  ||||||  || ||| || || | ||||||| |||||||||||||||||||||||||    
T  37053518 ttatcatataagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcatataagttataag 37053599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 265
Target Start/End: Complemental strand, 42817551 - 42817442
Alignment:
Q  156 gtttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    |||||||| |||||| ||||||||||  |||||| |||||||||| || |||| | |||||  ||  |||||||| | || |||| || |||||||||||    
T  42817551 gtttaattaagtgcttatagcataagcgtttatcatataagtgttgatttatatgttatttctataccaaaagataaaatgaagtcaagctgttttcata 42817452  T
Q  256 taagttataa 265  Q
    ||||| ||||    
T  42817451 taagtaataa 42817442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 3673724 - 3673812
Alignment:
Q  178 taagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||| ||| || |||||||| |||||||| || |||||  || |||||| || | ||||||| ||| |||||||||||||||||||||    
T  3673724 taagtgtttgtcatataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataagttataag 3673812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 5133711 - 5133779
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||||||||||||||  || ||||||||| | ||||||  |||||||||| ||||||| ||||||||    
T  5133711 ttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagct 5133779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 29430679 - 29430762
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||| || ||| |||||||||||||||||||  || ||||||| | | ||||||| ||||||||||| |||||| ||||||||    
T  29430679 tttatcatacaagggtttatgtataagctatttctataacaaaagttaa-ataaagtcaaactgttttcttataagctataagct 29430762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 31740091 - 31739991
Alignment:
Q  200 ttatgtataa-gctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctatcctagtgagcttatgaaaataagctgaa 298  Q
    |||||||||| |||||||  || || |||||| | ||||||| ||||| |||||||||||| |||||| | | |||| ||||||||| |||||| |||||    
T  31740091 ttatgtataaagctatttctataactaaagataaaataaagtcaaactattttcatataagctataagttgttctagagagcttatggaaataatctgaa 31739992  T
Q  299 a 299  Q
    |    
T  31739991 a 31739991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 14278035 - 14277960
Alignment:
Q  190 gtataagtgtttatgtataagctattttcattacaaaagatgatataaagt-aaaactgttttcatataagttata 264  Q
    ||||||||| |||||||||| ||||||  || || ||| || | ||||||| ||||||||||||||||||||||||    
T  14278035 gtataagtgcttatgtataaactatttctataactaaacattaaataaagtcaaaactgttttcatataagttata 14277960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 28803681 - 28803578
Alignment:
Q  156 gtttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    |||||||| |||| | || |||||| |  ||||| |||||||| |||| |||||| |||||  || ||||||||| | ||||||| |||||| |||||||    
T  28803681 gtttaattaagtgtttatggcataaatgcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcata 28803582  T
Q  256 taag 259  Q
    ||||    
T  28803581 taag 28803578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 43808471 - 43808574
Alignment:
Q  156 gtttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    |||||||| |||| | ||||||||||    |||| |||||||||||||||||||||||||||   ||  ||| || | ||||||| ||||| ||||||||    
T  43808471 gtttaattaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcata 43808570  T
Q  256 taag 259  Q
    ||||    
T  43808571 taag 43808574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 7282950 - 7283012
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    ||||||||||||||||||||||||| || | ||||||  | || |||| ||||||||||||||    
T  7282950 taagtgtttatgtataagctatttttataagaaaagaaaaaatgaagtcaaactgttttcata 7283012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 17952847 - 17952773
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    ||||| |||||| | |||| ||||||||||||  || ||||||||| | ||||||| ||||| ||||||||||||    
T  17952847 ttatcatataagagcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataag 17952773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 44443251 - 44443289
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagat 230  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  44443251 ataagtgcttatgtataagctatttttattacaaaagat 44443289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 5867337 - 5867256
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||| ||||||| ||||||| ||||||||||  |  |||||| | || ||||||||||| |||||||| ||||||| ||||    
T  5867337 ttatcatataagtatttatgtctaagctatttctaaaacaaaaaaagaaataaagtaaaagtgttttcacataagttttaag 5867256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 29429917 - 29429824
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagcta-ttttcattacaaaagatgatataaagtaaaactgttttcatataagttata 264  Q
    |||||| |||| |||||| |||||| | ||| |||||| ||| |||| || ||||||||| | ||||||| |||||||||||| ||||| ||||    
T  29429917 atagcacaagtttttatcatataagagcttacgtataaactacttttaatgacaaaagataaaataaagtcaaactgttttcacataagctata 29429824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 14666509 - 14666553
Alignment:
Q  222 acaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||||| | ||||||| |||||| ||||||||||||||||||    
T  14666509 acaaaagataaaataaagtcaaactgatttcatataagttataag 14666553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 35755645 - 35755617
Alignment:
Q  188 tcgtataagtgtttatgtataagctattt 216  Q
    |||||||||||||||||||||||||||||    
T  35755645 tcgtataagtgtttatgtataagctattt 35755617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 9833270 - 9833119
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||| |||| | ||| ||||||  |||||| |||||||| || | |||||| |||||  ||||||| | || | ||||||| ||||||||||| ||||    
T  9833270 ttaattaagtgtttataacataagcgtttatcatataagtgcttctctataagatatttctattacaataaataaaataaagtcaaactgttttcttata 9833171  T
Q  258 agttataagctatcctagtgagcttatgaaaataagctgaaattaatttatg 309  Q
    ||  |||||||||| |   ||||||||| ||||||| ||||| |||||||||    
T  9833170 agcaataagctatcatgaagagcttatggaaataagttgaaaataatttatg 9833119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 32386246 - 32386171
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||| |||||||| |||||||||||||||||   ||| ||||||| | |||||||||||||||||| |||||||    
T  32386246 tttatcatataagtgcttatgtataagctatttcacttagaaaagataaaataaagtaaaactgtttttatataag 32386171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 2206487 - 2206588
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||| |||||| ||||||||||   ||||||||||||  ||| |||||||| |||||| || ||||||||| | |||||||| || |||||| |||||    
T  2206487 ttaattaagtgcttatagcataagctcttatcgtataagcatttctgtataagttatttttataacaaaagataaaataaagtataattgtttttatata 2206586  T
Q  258 ag 259  Q
    ||    
T  2206587 ag 2206588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 268
Target Start/End: Original strand, 10032485 - 10032578
Alignment:
Q  175 gcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||  ||||| ||||| ||||||||||||||||||||| || |||| || ||| ||||||  |||||  ||||||||||| ||||||||    
T  10032485 gcataagtacttatcatataaatgtttatgtataagctatttttataacaataggtgaaataaaggcaaactaatttcatataagctataagct 10032578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 22742290 - 22742375
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||||||||||  |||| ||||||||||||  || ||||| ||| | ||||||| ||| |||||||||||||| ||||||||||    
T  22742290 ttatcgtataagttcttatctataagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagctataagctat 22742375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 265
Target Start/End: Original strand, 21959640 - 21959732
Alignment:
Q  173 tagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||||||| ||||||| || ||||| ||| ||||||||||||| ||| ||||||||| | ||||||| ||  ||||| |||||||| |||||    
T  21959640 tagcataagcctttatcatagaagtgcttaagtataagctatttccataacaaaagataaaataaagtcaatttgtttgcatataagctataa 21959732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 29958040 - 29957941
Alignment:
Q  201 tatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataa-gttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||| |||||||| || ||||||| | | |||||||  ||||||||||| | || | |||||||||| |||| ||||||||| |||||||||||||    
T  29958040 tatgtatatgctatttttataacaaaaggtaaaataaagtcgaactgttttcacagaaagctataagctattctagagagcttatggaaataagctgaaa 29957941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Original strand, 3155087 - 3155185
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    ||||||||||  |||||| ||||| || ||||||||||||||| |   ||||||||||| | | ||||| ||||||||| |||||||  ||||||||||    
T  3155087 atagcataagcgtttatcatataaatggttatgtataagctatctcttttacaaaagataaaacaaagtcaaactgtttccatataacctataagctat 3155185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 4003773 - 4003715
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    |||||| |||||| ||||||||||| |||||  |||||||| |||||||||||||||||    
T  4003773 ttaattaagtgcttatagcataagtttttatgctataagtgcttatgtataagctattt 4003715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 31672614 - 31672544
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    ||||| || |||||||||||||||| |||||| ||| |||||| || | ||||||| ||||||||||||||    
T  31672614 ttatcatacaagtgtttatgtataaactatttccatgacaaaaaataaaataaagtcaaactgttttcata 31672544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 7713950 - 7714023
Alignment:
Q  186 tatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||| |||||| | |||||||||| ||| |||||| ||||||||| | ||||||| ||| ||||||||||||||    
T  7713950 tatcatataagagcttatgtataaactactttcataacaaaagataaaataaagtcaaattgttttcatataag 7714023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 10154184 - 10154229
Alignment:
Q  224 aaaagatgatataaagtaaaactgttttcatataagttataagcta 269  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||    
T  10154184 aaaagataaaataaagtcaaactgttttcatataagttataagcta 10154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 31420855 - 31421012
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||| |||| | |||||||||   |||||  ||||||||||||| ||||||||||||  || | ||| | | | ||||| | ||||| |||| |||||    
T  31420855 ttaattaagtgtttatagcataatcatttattatataagtgtttatttataagctatttctataataaatggtaaaataaaatcaaactatttttatata 31420954  T
Q  258 agttataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatg 315  Q
    || |||||| | |  | || ||||||||||||||||||||||  || |||||||||||    
T  31420955 agatataagttgttttcgtaagcttatgaaaataagctgaaaacaacttatgaatatg 31421012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 33911421 - 33911345
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||||||||||| ||||||| || ||||||||| | ||||||| ||||||  | ||||||| |||||||||    
T  33911421 tataagtgtttatgtataatctatttttataacaaaagatcaaataaagttaaactg-atccatataatttataagct 33911345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 33259746 - 33259825
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||||| |||||||||||||||||| || ||||||||| |  | |||| | ||||||||| |||| | ||||||||||    
T  33259746 tataagtgcttatgtataagctatttttataacaaaagataaattgaagtcatactgttttcctatatgctataagctat 33259825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 33500615 - 33500544
Alignment:
Q  197 tgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||||||||||||  || ||||||||| |  |||| | |||||||||  ||||||||||||||||    
T  33500615 tgtttatgtataagctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagct 33500544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 323742 - 323820
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    ||||||| || ||||||||||||||  ||   ||||||| | ||||| | |||||||||||||||||||||| ||||||    
T  323742 ataagtggttttgtataagctatttctatattaaaagataaaataaattcaaactgttttcatataagttatgagctat 323820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 10452519 - 10452425
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||||||   |||| ||| |||| |||||||||||||||||  || |||||| || | ||||| | ||||| |||||||||||| ||||||    
T  10452519 atagcataagtggctatcatatcagtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataag 10452425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 2027530 - 2027469
Alignment:
Q  207 taagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||| || ||||||||| | ||||||| ||||| |||||||||||  ||||||||    
T  2027530 taagctatttttataacaaaagataaaataaagtcaaactattttcatataacctataagct 2027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 3169391 - 3169306
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    ||||| |||||||| |||||| ||| ||||||  || ||||||||||| ||||| |  ||||||||||| ||||| |||| |||||    
T  3169391 ttatcatataagtgcttatgtgtaacctatttctataacaaaagatgaaataaattcgaactgttttcacataagctatacgctat 3169306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 4420541 - 4420606
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttt 250  Q
    ||||||||||| | ||||||||||||||| ||  || ||||||||| | ||||||| |||||||||    
T  4420541 ttatcgtataaatatttatgtataagctacttctataacaaaagataaaataaagtcaaactgttt 4420606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 29274360 - 29274295
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||||||||||||||  ||  |||||||| | ||||||| ||| |||||||||||||| |||||    
T  29274360 ttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataa 29274295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 281996 - 281911
Alignment:
Q  187 atcgtataagtgtttatgtat----aagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||||||||||||||||||    ||||||||   || ||||||||| | ||||||| ||  |||||||||||||| ||||||||    
T  281996 atcgtataagtgtttatgtatctataagctattcctataacaaaagataaaataaagtcaacttgttttcatataagctataagct 281911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 8349810 - 8349734
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagtt 261  Q
    ||||| ||||||||||| ||||||| ||||||   | ||||||||| | ||||||| ||| |||||| |||||||||    
T  8349810 ttatcatataagtgtttgtgtataaactatttctctaacaaaagataaaataaagttaaattgtttttatataagtt 8349734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 33068734 - 33068622
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||| |||| | ||||||||||   |||||  |||| || ||||||||||| |||||  || ||||||||| | ||||  | |||||||||||| |||    
T  33068734 ttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaataatatcaaactgttttcaaata 33068635  T
Q  258 agttataagctat 270  Q
    || ||||||||||    
T  33068634 agatataagctat 33068622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 35536046 - 35536116
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||||||||||||||||  || ||| ||||| | ||||||| ||| |||||||||||||||||||||||||    
T  35536046 ttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataagttataagctat 35536116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 39551694 - 39551609
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgata-taaagtaaaactgttttcatataagttataagctat 270  Q
    ||||| ||||||| |||| |||||||||||||  || ||||||||| ||| ||||||||||||||||||||||||| ||||| ||||    
T  39551694 ttatcatataagtatttaagtataagctatttctataacaaaagat-atactaaagtaaaactgttttcatataagctataatctat 39551609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 1423077 - 1423153
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagcta 269  Q
    ||||||| ||||||||||||||||||||| ||||||||| | ||||| | |||||||||| | |||||||| ||||||    
T  1423077 ataagtgattatgtataagctattttcataacaaaagataaaataaattcaaactgtttt-aaataagttagaagcta 1423153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 5276147 - 5276216
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttca 253  Q
    |||||||| |||||| |||||||||||||||||| || ||||||||| | ||||||| |||| |||||||    
T  5276147 tttatcgtttaagtgcttatgtataagctatttttataacaaaagataacataaagtcaaaccgttttca 5276216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 22759109 - 22759193
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||| |||||| |||||||| ||||||||||  || ||||||||| | |||||| |||| |||||||||||||| || |||||    
T  22759109 tttatcatataagcgtttatgtttaagctatttgtataacaaaagataaaataaaggaaaattgttttcatataagctaaaagct 22759193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 27481459 - 27481359
Alignment:
Q  166 gtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||| ||||||||| | |||||  ||||||||||||||||||||||||||  || ||||| ||| | |  |||| ||||||||| |||||||| |||||    
T  27481459 gtgcttatagcataaatgtttattatataagtgtttatgtataagctatttctataacaaaggataaaacgaagtcaaactgtttccatataagctataa 27481360  T
Q  266 g 266  Q
    |    
T  27481359 g 27481359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 28340569 - 28340461
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    |||||| |||||| ||||||| ||| ||||||||| |||| || |||||||||||||||     |||||  || | ||||||| ||||||||||||| ||    
T  28340569 ttaattaagtgcttatagcattagtgtttatcgtacaagtattaatgtataagctatttcttcaacaaacaataaaataaagtcaaactgttttcatgta 28340470  T
Q  258 agttataag 266  Q
    |||||||||    
T  28340469 agttataag 28340461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 2223060 - 2223117
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagat 230  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||  || |||||||||    
T  2223060 atagcataaatctt-atcgtataagtgtttatgtataagctatttctataacaaaagat 2223117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 2894748 - 2894826
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    ||||||||| |||||||||||||||  || ||||||||| |  ||||||  |||||||||||  |||||||||||||||    
T  2894748 ataagtgttcatgtataagctatttctataacaaaagataaattaaagttgaactgttttcaagtaagttataagctat 2894826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 22387889 - 22387807
Alignment:
Q  319 gttttcataggctgtcctaaacaatctcacaagtgtgtatgctagttgataagttctagttagtcaatccaaacaggcctttg 401  Q
    ||||||||| ||| ||| ||||| ||||||| |||| ||||  |||  |||||||||||| |||||||||||||| |||||||    
T  22387889 gttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataagttctagtaagtcaatccaaacaagcctttg 22387807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 45593866 - 45593788
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagtta 262  Q
    |||||| ||||| || |||||||||||||||||   | |||||| || | ||||||| |||||||||||||||||||||    
T  45593866 tttatcatataaatgcttatgtataagctatttctgtaacaaaacataaaataaagtcaaactgttttcatataagtta 45593788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 27378965 - 27378901
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataa 258  Q
    |||||| |||||||||||||||||  |||||||||| | | |||||||| ||||||||||||||||    
T  27378965 taagtgcttatgtataagctatttctattacaaaag-taaaataaagtagaactgttttcatataa 27378901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 47134825 - 47134776
Alignment:
Q  250 ttcatataagttataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    ||||||||||||||||||||| || |  ||||||||||||||||||||||    
T  47134825 ttcatataagttataagctattcttgaaagcttatgaaaataagctgaaa 47134776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 5006639 - 5006575
Alignment:
Q  201 tatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||||||||||||   || ||||||||| | ||||||| |||||||||||||||||| |||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataa 5006575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 7244624 - 7244696
Alignment:
Q  183 ctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    ||||||| |||||||| |||||||||||||||||  ||  |||||||| | | ||||| ||||||||||||||    
T  7244624 ctttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcata 7244696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 29574748 - 29574692
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagt 240  Q
    |||||| ||||| || |||||||||||||||||| || ||||||||||| |||||||    
T  29574748 tttatcatataaatgcttatgtataagctatttttatgacaaaagatgaaataaagt 29574692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 30133980 - 30134056
Alignment:
Q  192 ataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||||||||||||||||||||||| |  ||||||||| | ||||||| ||  ||||||| |||||| | ||||||    
T  30133980 ataagtgtttatgtataagctatttttacaacaaaagataaaataaagtcaacttgttttcgtataagctttaagct 30134056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 1413224 - 1413141
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||||||||||| |||||| ||| ||||||| || ||||||| | | |||||||  |||| |||||||||||  ||||||||    
T  1413224 ttatcgtataagtgcttatgtctaaactattttaataacaaaaggtaaaataaagttgaacttttttcatataatctataagct 1413141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 27389295 - 27389338
Alignment:
Q  173 tagcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    ||||||||||  ||||| ||||||||||||||||||||||||||    
T  27389295 tagcataagtgcttatcatataagtgtttatgtataagctattt 27389338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 31341133 - 31341196
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttat 263  Q
    |||||||||||||||||  || ||||||||| | ||||||| |||||| ||| |||||||||||    
T  31341133 ttatgtataagctatttgtataacaaaagataaaataaagtcaaactggttttatataagttat 31341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 46081956 - 46082039
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagt-aaaactgttttcatataagttataag 266  Q
    ||||| ||||||||| |||| ||||||||||||  || || |||| | | | ||||| ||||||||||||||||||||||||||    
T  46081956 tttattgtataagtgattatatataagctatttctataacgaaagttaaaacaaagtcaaaactgttttcatataagttataag 46082039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 46223212 - 46223173
Alignment:
Q  191 tataagtgtttatgtataagctattttcattacaaaagat 230  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  46223212 tataagtgtttatgtataagctatttccataacaaaagat 46223173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 23918891 - 23918961
Alignment:
Q  195 agtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||||||||| |||| ||| |  |||||||||||| | ||||||| ||| |||||||||||||| |||||    
T  23918891 agtgtttatgtgtaagttatctctattacaaaagataaaataaagtcaaattgttttcatataagctataa 23918961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 28613665 - 28613599
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    |||||||||||||||||| || ||||||||| | | ||||| ||| ||||||  |||||||||||||    
T  28613665 ttatgtataagctatttttataacaaaagataaaacaaagttaaattgtttttgtataagttataag 28613599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 33894555 - 33894620
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||| |||||||||||||||||  || ||||||||| | || |||| ||||||||||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataag 33894620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 256
Target Start/End: Original strand, 47003984 - 47004082
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatat 256  Q
    |||||| |||||| |||||| || | |||||| ||||||||||||| | ||||||||||  || |||| |||| | ||||||| ||||| |||| ||||    
T  47003984 ttaattaagtgcttatagcaaaaatgtttatcatataagtgtttatatgtaagctatttctataacaatagataaaataaagtcaaactatttttatat 47004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 1417201 - 1417262
Alignment:
Q  198 gtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||||||||| ||||||  || ||||||||| | ||||||| ||| ||||||||||||||    
T  1417201 gtttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataag 1417262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 8445183 - 8445264
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaag 239  Q
    |||||| |||||  ||||||| ||| |||||| |||||||| || | ||||||||||||| || ||||||||| | ||||||    
T  8445183 ttaattaagtgcgtatagcattagtgtttatcatataagtgcttgtttataagctatttttataacaaaagataaaataaag 8445264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 31338444 - 31338513
Alignment:
Q  197 tgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||| ||||| ||| |||| | | ||||||| | ||||||| |||||||||| ||||||||||||||    
T  31338444 tgtttatatataatctaatttcgtaataaaagataaaataaagtcaaactgtttttatataagttataag 31338513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 36598477 - 36598436
Alignment:
Q  175 gcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    |||||||| |||||| ||| ||||||||||||||||||||||    
T  36598477 gcataagtgtttatcatattagtgtttatgtataagctattt 36598436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 49060464 - 49060545
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||| ||||||| ||||||||||||||||||  || |||||| || | ||||||| ||| | |||| ||||||| ||||||    
T  49060464 ttatcatataagtatttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataag 49060545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 1431467 - 1431423
Alignment:
Q  172 atagcataagtctttatcgtataagtgtttatgtataagctattt 216  Q
    |||||||||||  ||||| |||||||||||||||||||| |||||    
T  1431467 atagcataagtgcttatcatataagtgtttatgtataagttattt 1431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 2048171 - 2048104
Alignment:
Q  200 ttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    ||||||||||||||||| | ||||||||||| |  |||||| |||||| ||||| ||||| ||||||||    
T  2048171 ttatgtataagctattt-ctttacaaaagataaattaaagtcaaactgatttcagataagctataagct 2048104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 268
Target Start/End: Original strand, 27548186 - 27548270
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||| |||||||| |||| |||||||||||| | |  |||||||| | |||||||  || ||||||||| |||| ||||||||    
T  27548186 tttatcttataagtgcttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataagct 27548270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 30456559 - 30456515
Alignment:
Q  222 acaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||||| | ||||||| ||| |||||||||||||||||||||    
T  30456559 acaaaagataaaataaagtcaaattgttttcatataagttataag 30456515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 32703061 - 32703142
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    |||||| ||||| ||||||||||||||||||||  |||| ||||||| | ||||| | ||| |||||||||||||| |||||    
T  32703061 tttatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagctataa 32703142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 38462205 - 38462277
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    ||||| ||||||||||||| ||||||||||||  ||  |||||||| | ||||||| ||||||||||||||||    
T  38462205 ttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 266
Target Start/End: Complemental strand, 43116601 - 43116493
Alignment:
Q  158 ttaatttagtgctcatagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatata 257  Q
    ||||||||||| | ||||||||| | |||||| || |||||||||||| ||||||||||  || ||||||||| | || || | ||||  ||||||||||    
T  43116601 ttaatttagtgtttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaaatcaaatcaaacaattttcatata 43116502  T
Q  258 agttataag 266  Q
    || ||||||    
T  43116501 agctataag 43116493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 20192744 - 20192669
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||| |||||||||||||||||  || ||||||||| | ||||||| |||| ||||||||||||  ||||||||    
T  20192744 taagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagct 20192669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 36646519 - 36646448
Alignment:
Q  194 aagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataa 265  Q
    ||||||| || ||||||||||||  || ||||||||| | |||||||| || ||||||||||||||||||||    
T  36646519 aagtgttgatatataagctatttctatgacaaaagataaaataaagtataattgttttcatataagttataa 36646448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 255
Target Start/End: Complemental strand, 40122899 - 40122828
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    |||||||||| |||  |||||||||||||||||  || ||||||||| | ||||||| ||||||||||||||    
T  40122899 tttatcgtatcagtacttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcata 40122828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 3757960 - 3758042
Alignment:
Q  173 tagcataagtctttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcata 255  Q
    |||||||||| ||||| || |||||| ||||||||||||||||||  | |||||| || | ||||||| ||||| ||||||||    
T  3757960 tagcataagtgtttattgtgtaagtgcttatgtataagctatttttgtaacaaaatataaaataaagtcaaactcttttcata 3758042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 24605154 - 24605080
Alignment:
Q  193 taagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagc 267  Q
    |||||||||||||||||| |||||  || ||||||||||| ||||||| ||||  ||| ||| ||||||||||||    
T  24605154 taagtgtttatgtataagttatttctataacaaaagatgaaataaagtcaaaccatttgcatgtaagttataagc 24605080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 22232750 - 22232835
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    ||||| ||||| || | |||||||||||||||  || ||||| ||| | ||||||| |||||||||||||||||||  ||||||||    
T  22232750 ttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataagtcgtaagctat 22232835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 33307726 - 33307650
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagtt 261  Q
    ||||| |||||||| |||||||||||||||||   | |||||| |||| ||||||| ||| | ||||||||||||||    
T  33307726 ttatcatataagtgcttatgtataagctatttcagtaacaaaatatgaaataaagtcaaattattttcatataagtt 33307650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 27792795 - 27792870
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||||| |||||||| |||||||||||||||||  |  ||||||||| | |||| || ||||| ||||||||||||    
T  27792795 tttatcatataagtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatataag 27792870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 36783474 - 36783407
Alignment:
Q  192 ataagtgtttatgtataa-gctattttcattacaaaagatgatataaagtaaaactgttttcatataa 258  Q
    |||||||||||||||||| |||||||  ||  |||||||| | ||||||||||| |||||||||||||    
T  36783474 ataagtgtttatgtataaagctatttctataccaaaagataaaataaagtaaaattgttttcatataa 36783407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 51278304 - 51278225
Alignment:
Q  184 tttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttat 263  Q
    |||||| ||||| || | |||||||||||||||  || |||||| || | ||||||| ||||||||||||| ||||||||    
T  51278304 tttatcatataattgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgttttcatttaagttat 51278225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 41028997 - 41028923
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    ||||| |||||||| |||||||||||||||||  || ||||||||  | ||||||| || ||||||||| |||||    
T  41028997 ttatcatataagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataag 41028923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 49587042 - 49586988
Alignment:
Q  205 tataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    ||||||||||||  || ||||||||| | ||||||| ||||||||||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataag 49586988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 6483815 - 6483852
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  6483815 ataagctatcctagagagcttattaaaataagctgaaa 6483852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 25459605 - 25459548
Alignment:
Q  337 aaacaatctcacaagtgtgtatgctagttgataagttctagttagtcaatccaaacag 394  Q
    |||||||||||||||||  |||||||||||||||| || | | | |||||||||||||    
T  25459605 aaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacag 25459548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 28779280 - 28779361
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||| ||||| || || |||||||||| |||| || |||  |||||| ||||||| ||||| |||||||||||| ||||||    
T  28779280 ttatcatataattgcttttgtataagctgtttttataacatcagatgaaataaagtcaaactattttcatataagctataag 28779361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 34924594 - 34924557
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaa 299  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  34924594 ataagctatcttagagagcttatgaaaataagctgaaa 34924557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 31337510 - 31337466
Alignment:
Q  222 acaaaagatgatataaagtaaaactgttttcatataagttataag 266  Q
    ||||||||| | ||||||| |||||||||| ||||||||||||||    
T  31337510 acaaaagataaaataaagtcaaactgtttttatataagttataag 31337466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 33883806 - 33883750
Alignment:
Q  262 ataagctatcctagtgagcttatgaaaataagctgaaattaatttatgaatatgtca 318  Q
    |||||||||| ||| || ||||||||||||||||||||  || ||||||| ||||||    
T  33883806 ataagctatcttagagaacttatgaaaataagctgaaaacaacttatgaacatgtca 33883750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 270
Target Start/End: Original strand, 36189491 - 36189575
Alignment:
Q  186 tatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagctat 270  Q
    |||| ||||||||  ||||||||||||||||   ||||||||||| | ||||||| ||| ||||||  |||| | ||||||||||    
T  36189491 tatcatataagtgagtatgtataagctatttctcttacaaaagataaaataaagttaaattgtttttgtatatgatataagctat 36189575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 49772814 - 49772782
Alignment:
Q  185 ttatcgtataagtgtttatgtataagctatttt 217  Q
    ||||| |||||||||||||||||||||||||||    
T  49772814 ttatcatataagtgtttatgtataagctatttt 49772782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 52618946 - 52619010
Alignment:
Q  204 gtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataagttataagct 268  Q
    |||||||||||||  |  ||||| ||| | ||||||| ||| |||||||||||||||||||||||    
T  52618946 gtataagctatttctaaaacaaatgattaaataaagttaaattgttttcatataagttataagct 52619010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 1219 - 1146
Alignment:
Q  186 tatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||| |||||||| |||||||||||||||||  || ||||||||| | ||||||| ||||| || |||||||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataag 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 2756 - 2829
Alignment:
Q  186 tatcgtataagtgtttatgtataagctattttcattacaaaagatgatataaagtaaaactgttttcatataag 259  Q
    |||| |||||||| |||||||||||||||||  || ||||||||| | ||||||| ||||| || |||||||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataag 2829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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