View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_17 (Length: 393)
Name: NF18856_low_17
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 59 - 386
Target Start/End: Original strand, 35834586 - 35834913
Alignment:
| Q |
59 |
ggaaattccaaagaattgacattgatcgtggaggatcggcggcattacaaagaataacaagacatgatgaatttgaatccaagctaatagaagaataaga |
158 |
Q |
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| T |
35834586 |
ggaaattccaaagaattcacattgatcgtggaggatcggcggcattacaaagaataacacgacatgatgaatttgaatccaaactaatagaagaataaga |
35834685 |
T |
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| Q |
159 |
gaaagtacgtacgtaccatggtagaggtctaagttggaagggttgtgtgagaaaattggttcatgaattgaagagaagaaaaaggaatcggtgacggtta |
258 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834686 |
gaaattacgtacgtaccatggcagaggtctaagttggaagggttgtgtgagaaaattggttcatgaattgaagagaagaaaaaggaatcggtgacggtta |
35834785 |
T |
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| Q |
259 |
tggaaatgttgaaagcgaaaagccatttttgatgaatttttgagagaaatgaaagtgaaagtgaatgcgattgaacattcttcaagcttgccttcaactt |
358 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
35834786 |
tggaaatgttgaaagcgagaagccatttttgatgaatttttgagagaaatgaaagtgtaagtgaatgcgattcaacattcttcaagctggccttcaactt |
35834885 |
T |
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| Q |
359 |
cggcactttcttcctcttccctttgctt |
386 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35834886 |
cggcactttcttcctcttccctttgctt |
35834913 |
T |
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