View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_18 (Length: 383)
Name: NF18856_low_18
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 2016712 - 2017081
Alignment:
| Q |
13 |
aatatgatccaaataagaagagaaaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2016712 |
aatatgatccaaataagaagagaaaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggt |
2016811 |
T |
|
| Q |
113 |
aaccagatttctcaggtggattgtaacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2016812 |
aaccagatttctcaggtggattgtaacatgtacttttgttgtccttacaggcataatttgcaagatccttctgagcttgctggcacgtttggttccctac |
2016911 |
T |
|
| Q |
213 |
tgcccagtccaacaacacaggaaattccttcttctccaacttgaggaggtccgtggattcgaaagtgcaggctccattttcaacnnnnnnnngcataacc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
2016912 |
tgcccagtccaacaacacaggaaattccttcttctccaacttgaggaggtccgtggattcgaaagtgtaggctccattttcaac-aaaaaaagcataacc |
2017010 |
T |
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| Q |
313 |
acaaggattgaagtcatgtactgctgagtgattgttgaatgcacctacagtaacaaaggacactttctcga |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017011 |
acaaggattgaagtcatgtactgctgagtgattgttgaatgcacctacagtaacaaaggacactttctcga |
2017081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 37 - 352
Target Start/End: Complemental strand, 40566938 - 40566624
Alignment:
| Q |
37 |
aagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtggattgt |
136 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||| |||||| |||| | || ||||| |
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| T |
40566938 |
aagatatatatagtaccttggcaaccatgaatgaggtaaggatttccccgatatccatgcacacatctacaaaggtagccagatctctcggctgaattgt |
40566839 |
T |
|
| Q |
137 |
aacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
236 |
Q |
| |
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|||||||||||||| || ||||||| |||||||| | |||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
40566838 |
aacatgtacttttgctggccttacatgcataattggaaagatcattctgagcatgctggcatgtttggttccctactgcccagtcgaacaacacaggaaa |
40566739 |
T |
|
| Q |
237 |
ttccttcttctccaacttgaggaggtccgtggattcgaaagtgcaggctccattttcaacnnnnnnnngcataaccacaaggattgaagtcatgtactgc |
336 |
Q |
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| T |
40566738 |
ctccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaac-cacaaaagaataaccacagggattgaaatcatgtacgtc |
40566640 |
T |
|
| Q |
337 |
tgagtgattgttgaat |
352 |
Q |
| |
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|||||||||||||||| |
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| T |
40566639 |
tgagtgattgttgaat |
40566624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 40600953 - 40600732
Alignment:
| Q |
40 |
aaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtgg---attgt |
136 |
Q |
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|||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| ||||||||||||||| | |||| || || || |
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| T |
40600953 |
aaatatataataccttggcaaccatgaacgagataaggatttccccgatatccatgagagcatctacaaaggtaaccagatctgtcagttgttgcatcgt |
40600854 |
T |
|
| Q |
137 |
aacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
236 |
Q |
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||||||||||||||| | ||||||| |||||| | | |||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |
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| T |
40600853 |
aacatgtacttttgtcggccttacacgcataagtggaaagatccttctgagcttgatgacaagtttggttccctactgcccagtccaacaacacaggaaa |
40600754 |
T |
|
| Q |
237 |
ttccttcttctccaacttgagg |
258 |
Q |
| |
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||||| || | |||||||||| |
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| T |
40600753 |
ctccttgttattcaacttgagg |
40600732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 28 - 343
Target Start/End: Complemental strand, 40589927 - 40589606
Alignment:
| Q |
28 |
agaagaga-aaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctca |
126 |
Q |
| |
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|||||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |
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| T |
40589927 |
agaagagataaaaaaatacatgataccttcgcaaccatgaatgaggtaaggatttcccctatatccatcaaagcatttgcaaaggtaaccagatttgatg |
40589828 |
T |
|
| Q |
127 |
g---gtggattgtaacatgtacttttgttgtccttacaggcata---atttggaagatccttctgagcttgctggcacgtttggttccctactgcccagt |
220 |
Q |
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| || || ||||||| ||||| ||| ||||||| ||||| | ||| ||||||||||||||||||||| || |||||||| ||||||||||||| |
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| T |
40589827 |
gtttctgcatcgtaacatatacttctgtctgccttacaagcatacttacttgaaagatccttctgagcttgctgacaggtttggtttcctactgcccagt |
40589728 |
T |
|
| Q |
221 |
ccaacaacacaggaaattccttcttctccaacttgaggaggtccgtggattcgaaagtgcaggctccattttcaacnnnnnnnngcataaccacaaggat |
320 |
Q |
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|||||||||||||||| | |||||||| | |||| ||||||| |||| | ||||| || || ||||||||||||| |||||||||| |||| |
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| T |
40589727 |
ccaacaacacaggaaagttcttcttctttagcttggggaggtctgtggttgcgaaaatgtagtctccattttcaacaataaaaa-cataaccacacggat |
40589629 |
T |
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| Q |
321 |
tgaagtcatgtactgctgagtga |
343 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
40589628 |
tgaagtcatatactgctgagtga |
40589606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 42 - 263
Target Start/End: Complemental strand, 40571632 - 40571408
Alignment:
| Q |
42 |
atatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggt---ggattgtaa |
138 |
Q |
| |
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|||||| ||||||| |||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||| | | | |||| |||| |
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| T |
40571632 |
atatataataccttcgcaaccattaatgaggtaaggatttccccgatatccaccaaagcatctgcaaaggtaaccagatttgttggttcctggatcgtaa |
40571533 |
T |
|
| Q |
139 |
catgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaatt |
238 |
Q |
| |
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||||||||||| | | ||||||| |||||||| ||||| ||||||||||||| |||| |||||||| ||||||| ||||| ||||||||||||||| | |
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| T |
40571532 |
catgtacttttctcggccttacatgcataattgaaaagattcttctgagcttgcaggcatgtttggtttcctactgtccagttcaacaacacaggaaact |
40571433 |
T |
|
| Q |
239 |
ccttcttctccaacttgaggaggtc |
263 |
Q |
| |
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|||| |||| ||||||||||||||| |
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| T |
40571432 |
ccttattcttcaacttgaggaggtc |
40571408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 40578067 - 40577848
Alignment:
| Q |
30 |
aagagaaaagaaatatatgataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcag-- |
127 |
Q |
| |
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||||||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| | | |
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| T |
40578067 |
aagagaaaaaaaatatataataccttggcaaccattaatgaggtaaggatttccccgatatccatgagagcatctgcaaaggtaaccagatttgttggtt |
40577968 |
T |
|
| Q |
128 |
-gtggattgtaacatgtacttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaaca |
226 |
Q |
| |
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|| | ||||||||||||||| || ||||||| |||||||| | | ||| ||||||||||||| |||| ||||| || |||||| ||||||||||| |
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| T |
40577967 |
cctgtttcgtaacatgtacttttaatggccttacaagcataattggaatgattcttctgagcttgcaggcatgtttgatttcctactttccagtccaaca |
40577868 |
T |
|
| Q |
227 |
acacaggaaattccttcttc |
246 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
40577867 |
acacaggaaactccttcttc |
40577848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 40596312 - 40596122
Alignment:
| Q |
49 |
ataccttggcaaccatgaatgaggtaaggatttcccctatatccatgaaggcatctgcaaaggtaaccagatttctcaggtgg---attgtaacatgtac |
145 |
Q |
| |
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||||||||||| ||||| ||||||||||||| |||| |||||||| ||||||||| |||||||||||||| | || ||| || |||||| ||| |
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| T |
40596312 |
ataccttggcagccatggttgaggtaaggattaccccaatatccatccctgcatctgcagaggtaaccagatttgtgagttggtgcatcataacatttac |
40596213 |
T |
|
| Q |
146 |
ttttgttgtccttacaggcataatttggaagatccttctgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
236 |
Q |
| |
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|||||| ||||||| |||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40596212 |
ttttgtctgccttacatgcataagtggaaagatccttccgagcttgctggcacgtttggttccctactgcccagtccaacaacacaggaaa |
40596122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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