View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_2 (Length: 690)
Name: NF18856_low_2
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 17 - 685
Target Start/End: Complemental strand, 43851359 - 43850703
Alignment:
| Q |
17 |
actatgaattcaaacttagtagaaagggaaattcattcactataaaacaatccaataaaaagctgccatgtggcatttgtctttagttgaagtatttctg |
116 |
Q |
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| T |
43851359 |
actatgaattcaaacttagtagaaagggaaattcattcactataaaacaatccaataaaaagctgccatgtggcatttgtctttagttgaagtatttctg |
43851260 |
T |
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| Q |
117 |
ttttgccgttgaaattattaattatgaagcattat---gcatttctgtttataaatgtatgcttgctaaagtttagtctttggtagtgttagttatacta |
213 |
Q |
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| T |
43851259 |
ttttgccgttgaaattattaattatgaagcattattatgcatttctgtttataaatgtatgcttgctaaagtttagtctttggtagtgttagttatacta |
43851160 |
T |
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| Q |
214 |
ttgatgcttgtaatctggttctgtgtctggttggtttctgtctgtagttgatttctctaaagaaaagggaagagtaaccatttactacccttgctaatga |
313 |
Q |
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| T |
43851159 |
ttgatgcttgtaatctggttctgtgtctg---------------tagttgatttctctgaagaaaagggaagagtaaccatttactacccttgctaatga |
43851075 |
T |
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| Q |
314 |
gtaggttaacctttatgatttacggatctcctgcagtttgtacggtgatctatgtcttaaagttcttcgattgaacttgaatgtaaataatagcttgtta |
413 |
Q |
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| T |
43851074 |
gtaggttaacctttatgatttatgaatctcctggagtttgtacggtgatctatgtcttagcgttcttcgattgaacttgaatgtaaataatagcttgtta |
43850975 |
T |
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| Q |
414 |
tgtggtttgtgaattgaaattaaagagtgatgggcatgcgcgcgcatgcacacagggtctagattttattattctaacgtttatggattggctttggagc |
513 |
Q |
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| T |
43850974 |
tgtggtttgtgatttgaaattaaagagtgatgggcatgcgcgcgcatgcacacagggtctagattttattattctaacgtttatggattggctttggagc |
43850875 |
T |
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| Q |
514 |
aaaaccattttctgatatatttgttaccttgcagcaggacactataaaaggagccaagtggagctgtgcaactgagatgacagaagaacaagcattatcg |
613 |
Q |
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| T |
43850874 |
aaaaccattttctgatatatttgttaccttgcagcaggacactataaaaggagccaagtggagctgtgcaactgagatgacagaagaacaagcattatcg |
43850775 |
T |
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| Q |
614 |
gagcagcaaagaatgtttgtagagtcacgtgctggaattaaccgatgtttccaatcaacctgatgatgtcca |
685 |
Q |
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| T |
43850774 |
gagcagcaaagaatgtttgtagagtcacctgctggaattaaccgatgtttccaatcaacctaatgatgtcca |
43850703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 520 - 651
Target Start/End: Complemental strand, 24012500 - 24012369
Alignment:
| Q |
520 |
attttctgatatatttgttaccttgcagcaggacactataaaaggagccaagtggagctgtgcaactgagatgacagaagaacaagcattatcggagcag |
619 |
Q |
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| T |
24012500 |
attttctgatgtatttgttgccttgcagcaagactctataaaaggtgccaagtggagtggcgcagctgagatgaccgaggaacaagcattagcagagcag |
24012401 |
T |
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| Q |
620 |
caaagaatgtttgtagagtcacgtgctggaat |
651 |
Q |
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| T |
24012400 |
caaaggatgtttgcagaggcacgtgctagaat |
24012369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 324 - 487
Target Start/End: Complemental strand, 24012783 - 24012625
Alignment:
| Q |
324 |
ctttatgatttacggatctcctgcagtttgtacggtgatctatgtcttaaagttcttcgattgaacttgaatgtaa-ataatagcttgttatgtggtttg |
422 |
Q |
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| T |
24012783 |
ctttatgatttatcgatctcttggagtttgtatggtcatctatgttttagagttcatagattgaacttgaatgtaattttacagcttgttctgtggtttg |
24012684 |
T |
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| Q |
423 |
tgaattgaaattaaagagtgatgggcatgcgcgcgcatgcacacagggtctagattttattattc |
487 |
Q |
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| T |
24012683 |
cgttttgagattgaagagtgatgagtat------gaatgtacacagggtctagattttattattc |
24012625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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