View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_low_20 (Length: 365)

Name: NF18856_low_20
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_low_20
NF18856_low_20
[»] chr2 (1 HSPs)
chr2 (1-345)||(17831407-17831751)
[»] chr4 (4 HSPs)
chr4 (1-345)||(7135462-7135785)
chr4 (108-235)||(52525386-52525515)
chr4 (177-337)||(22292156-22292316)
chr4 (1-60)||(52525327-52525386)
[»] chr8 (3 HSPs)
chr8 (177-258)||(5658334-5658415)
chr8 (178-251)||(14677485-14677558)
chr8 (177-258)||(31100334-31100415)
[»] scaffold0045 (1 HSPs)
scaffold0045 (177-257)||(11096-11176)
[»] chr6 (2 HSPs)
chr6 (177-251)||(10093043-10093117)
chr6 (177-258)||(33044908-33044989)
[»] scaffold0035 (1 HSPs)
scaffold0035 (178-258)||(35639-35719)
[»] chr7 (1 HSPs)
chr7 (203-262)||(37362214-37362273)
[»] chr3 (1 HSPs)
chr3 (177-222)||(17682380-17682425)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 17831751 - 17831407
Alignment:
Q  1 gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagggagataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17831751 gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttttaaaatctgagtcatcttaagcgttggagagggagataaa 17831652  T
Q  101 ctgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaag 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831651 ctgagaataatgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaag 17831552  T
Q  201 ggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831551 ggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaaca 17831452  T
Q  301 gaagaagcattgttgatgaagggagagagaaacgatgaaagattt 345  Q
    |||||||||| || ||||||||||||||||||||| |||||||||    
T  17831451 gaagaagcatcgtcgatgaagggagagagaaacgacgaaagattt 17831407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 7135785 - 7135462
Alignment:
Q  1 gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgatttttgaaaatctgagtcatcttaagcgttggagagggagataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |||    
T  7135785 gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacatccgatttttgaaaatcttagtcatctcaagcgttggagagggagaaaaa 7135686  T
Q  101 ctgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaattcatagaaag 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      
T  7135685 atgagaatagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaa------------------ 7135604  T
Q  201 ggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatgatggatgtttaagatttagcaaca 300  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||    
T  7135603 ---aaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagagcattaagtatgatggatgtttgagatttagcaaca 7135507  T
Q  301 gaagaagcattgttgatgaagggagagagaaacgatgaaagattt 345  Q
    ||||||||||||||||||||||||||||||||||| | |||||||    
T  7135506 gaagaagcattgttgatgaagggagagagaaacgacggaagattt 7135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 108 - 235
Target Start/End: Original strand, 52525386 - 52525515
Alignment:
Q  108 tagtgaagaatgattgactccataaggattctaggggatgaaagtgaaactgagaactaaacttcagagaaacaaaattcaatt--catagaaagggtaa 205  Q
    |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||   |||||||||||||    
T  52525386 tagtaaagaatgattgactccataaaggttctaggggatgaaagtgaaactgagaactgaaattcagagaaacgaaattcaatttctatagaaagggtaa 52525485  T
Q  206 aactattaccttgagagaaaattcacaaaa 235  Q
    ||| ||||||||||||||||||||||||||    
T  52525486 aacgattaccttgagagaaaattcacaaaa 52525515  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 22292156 - 22292316
Alignment:
Q  177 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaataaaacattaagcatg 276  Q
    ||||| |||||||| ||||||||||| ||| | |||||||||||||||| ||| |||||| | ||||||||||||  | |||||   | ||||||||||     
T  22292156 aaacacaattcaatacatagaaagggaaaagcgattaccttgagagaaacttcgcaaaattagcaaatctgaacagtggtggaagggagcattaagcata 22292255  T
Q  277 atggatgtttaagatttagcaacagaagaagcattgttgatgaagggagagagaaacgatg 337  Q
    |||||||| | ||||| |||||| | |||||| ||||||||||| |||||||| |||||||    
T  22292256 atggatgtcttagattcagcaacgggagaagctttgttgatgaacggagagagcaacgatg 22292316  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52525327 - 52525386
Alignment:
Q  1 gtgaaagtgaaaagatgaacaattttgggaatacctgaacattcaatacctccgattttt 60  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  52525327 gtgaaagtgaaaagatgaacaattttgggaatgcctgaacattcaacacctccaattttt 52525386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 5658415 - 5658334
Alignment:
Q  177 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 258  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | |||||||||||||||||||    
T  5658415 aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacaacgatgg 5658334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 14677485 - 14677558
Alignment:
Q  178 aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca 251  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | ||||||||||||    
T  14677485 aacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca 14677558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 31100334 - 31100415
Alignment:
Q  177 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 258  Q
    ||||| ||||||||||||||||| |  ||| |||||||||||||||||| ||  |||||| | |||||||||||| ||||||    
T  31100334 aaacacaattcaattcatagaaaagaaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg 31100415  T

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Target: scaffold0045 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 11096 - 11176
Alignment:
Q  177 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatg 257  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | ||||| ||||||||||||    
T  11096 aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatttgaacaacgatg 11176  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 10093117 - 10093043
Alignment:
Q  177 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaaca 251  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||||||| ||  |||||| | ||||||||||||    
T  10093117 aaacacaattcaattcatagaaagggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaaca 10093043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 33044908 - 33044989
Alignment:
Q  177 aaacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 258  Q
    ||||| ||||||||||||||||| || ||| |||||||||||||||||| ||  |||||| | |||||||||||| ||||||    
T  33044908 aaacacaattcaattcatagaaaaggaaaagctattaccttgagagaaactttgcaaaattagcaaatctgaacagcgatgg 33044989  T

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Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 35719 - 35639
Alignment:
Q  178 aacaaaattcaattcatagaaagggtaaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatgg 258  Q
    |||| |||||||||||||||||||| ||| |||||||||||||| ||| ||  |||||| | |||||||||||| ||||||    
T  35719 aacacaattcaattcatagaaagggaaaagctattaccttgagataaactttgcaaaattagcaaatctgaacagcgatgg 35639  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 37362214 - 37362273
Alignment:
Q  203 taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata 262  Q
    |||||| || |||||||||||||||||| ||||| ||||||| ||||||| |||||||||    
T  37362214 taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata 37362273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 17682425 - 17682380
Alignment:
Q  177 aaacaaaattcaattcatagaaagggtaaaactattaccttgagag 222  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||||    
T  17682425 aaacacaattcaattcatagaaagggaaaaacgattaccttgagag 17682380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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