View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18856_low_22 (Length: 357)
Name: NF18856_low_22
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 8840158 - 8840489
Alignment:
| Q |
10 |
agaagaaagtcaatagccaatcgtgttggtaaaattcaacagaaagcgatggcgtttttggaagaagattttcgcgtgttgatagaatattctagaatcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8840158 |
agaagaaagtcaatagccaatcgtgttggtacaattcaacagaaagcgatggcgtttttggaagaagattttcgcgtgttgatagaatattctagaatcc |
8840257 |
T |
|
| Q |
110 |
agaccgaagtgaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaaaa---gtggcgtcagatcaacaggacgggcaatcagatcatcagga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8840258 |
agaccgaagtgaatcctgatatcaatatcaatgaaaaggttgatgcaaaacgaaaacaagtggtgtcggatcaacaggacgggcaatcagatcatcagga |
8840357 |
T |
|
| Q |
207 |
tcaaccagaagaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagtaagattgtgggggagatgttgatcggaggatatgaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8840358 |
tcaaccagaagaattcgaaacgaattttcctggttatcctgatgaggcgattgtttgtatgagcaagattgtgggggagatgttgatcggaggatatgaa |
8840457 |
T |
|
| Q |
307 |
agtgagtgttgtcaggtgtacattgtggcgag |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8840458 |
agtgagtgttgtcaggtgtacattgtggcgag |
8840489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University