View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_24 (Length: 353)
Name: NF18856_low_24
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 38582219 - 38582545
Alignment:
| Q |
12 |
aaagggtcaaagtagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagnnnnnnntgatgacttgttggatacaatg |
111 |
Q |
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| T |
38582219 |
aaagggtcaaagtagcttgtttaagctaaaccatgaagggacacaaactcaagaaaaaacacaaacacaagaaaaaaatgatgacttgttggatacaatg |
38582318 |
T |
|
| Q |
112 |
gattacacacctgcctcaaagaatccaccaatccataattaaagtctcctagtttta-nnnnnnnnnctttccttagaggacaatttttggtaggnnnnn |
210 |
Q |
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| T |
38582319 |
gattacacacctgcctcaaagaatccaccaatccataattaaagtctcctagttttatttattttttctttccttagaggacaatttttggtaggaaaca |
38582418 |
T |
|
| Q |
211 |
nnngcaccaatccacagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatccacacttaa |
310 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582419 |
aaagcaccaatccagagtgcttaattaccctgcaattctatctatgagcttcaatgtaaagatatattttgaactttgaagtagggaaatccacacttaa |
38582518 |
T |
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| Q |
311 |
atcacagatttttgtggaggaaaaagc |
337 |
Q |
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||||||||||||||||||||||||||| |
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| T |
38582519 |
atcacagatttttgtggaggaaaaagc |
38582545 |
T |
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