View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_3 (Length: 684)
Name: NF18856_low_3
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 305 - 673
Target Start/End: Complemental strand, 9421777 - 9421406
Alignment:
| Q |
305 |
gttgaaatgaaaatgatatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtatataacggata |
404 |
Q |
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| T |
9421777 |
gttgaaatgaaaatgaaatcataaccgttatagttatgtaatgtaaacatactttacacatgagattaaaatactctactaggaccgtatgtaacggata |
9421678 |
T |
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| Q |
405 |
aataataggtattatggttattaattggtggtaatgattttgtttagtgggggg---agataaataaatgggtaagttttaatttttgttgtttttggac |
501 |
Q |
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| T |
9421677 |
aataataggtattatggttattaattggtggtaatgattttgtttagtgggggggggagataaataaatgggtaagttttaatttttgttgtttttggag |
9421578 |
T |
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| Q |
502 |
aaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgctcctataaagtttttgttgcacgcgctatcatgctttgttcttaa |
601 |
Q |
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| T |
9421577 |
aaatcattggagctccgccgccacgaatgcatgacgaaatcttggaaaagtatgctcctataaagtttttgttgcacgcgctatcatgctttgctcttaa |
9421478 |
T |
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| Q |
602 |
atgttcacttgataactttactatatagaagactcttcatatactgtatnnnnnnnttagaagactcttcat |
673 |
Q |
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| T |
9421477 |
atgttcacttgataactttactatatagaagactcttcatatactgtataaaaaaattagaagactcttcat |
9421406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 9422057 - 9421917
Alignment:
| Q |
20 |
caccagggtgagaccaataaaagaaagtcatggttatccaaagtaaagccatgatcaaaagagagtaagcaatgttttcttgtgtgcatttggaagcaag |
119 |
Q |
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| T |
9422057 |
caccagggtgagaccaataaaagaaagtcatggttatccaaagtaaagccatgatcaaaagagagtaagcaatgttttcttgtgtgcatttggaagcaag |
9421958 |
T |
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| Q |
120 |
agcaaaaatccagagggtatcaatgttggttgacatgtttc |
160 |
Q |
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| T |
9421957 |
agcaaaaatccagaggttgtcaatgttggttgacatgtttc |
9421917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 9421855 - 9421807
Alignment:
| Q |
227 |
tgtggtgaggtgagtaagtaagaggttggttgaggggaatatatatagg |
275 |
Q |
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| T |
9421855 |
tgtggtgaggtgagtaagtaagaggttggttgaggggaatatatatagg |
9421807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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