View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_30 (Length: 278)
Name: NF18856_low_30
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 11169693 - 11169460
Alignment:
| Q |
1 |
attcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaat |
100 |
Q |
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| T |
11169693 |
attcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaat |
11169594 |
T |
|
| Q |
101 |
gtggttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtg |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11169593 |
gtggttgcagaacaacaagattttgaacattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtg |
11169494 |
T |
|
| Q |
201 |
tgcaagaaggtactatggttggacatccagtgaa |
234 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |
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| T |
11169493 |
tgcaagaaggtactatggttggacatcccgtgaa |
11169460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 11275076 - 11274872
Alignment:
| Q |
2 |
ttcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatg |
101 |
Q |
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|||||||||||||| ||||||| ||||||| |||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11275076 |
ttcataaatgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaatg |
11274977 |
T |
|
| Q |
102 |
tggttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgt |
201 |
Q |
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| T |
11274976 |
tggttgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacatggtgt |
11274877 |
T |
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| Q |
202 |
gcaag |
206 |
Q |
| |
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||||| |
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| T |
11274876 |
gcaag |
11274872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 11208512 - 11208255
Alignment:
| Q |
4 |
cataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtg |
103 |
Q |
| |
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|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||| |||| | |
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| T |
11208512 |
cataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtcttcatgtggcttgacgctaataag |
11208413 |
T |
|
| Q |
104 |
gttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgc |
203 |
Q |
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|| | |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||| ||||| |
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| T |
11208412 |
gtagtagaacaacaagattttgagtgttataggagcattctttcaagtgtgtttgatccaattattttgaagatgataaaggatgaggggcatggtgtgg |
11208313 |
T |
|
| Q |
204 |
aagaaggtactatggttggacatccagtgaagnnnnnnnngaatcgttggttaccatt |
261 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
11208312 |
aagaaggtactatggttgggcatccagtgaagaaaaagaagaatcgttggttaccatt |
11208255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 11155410 - 11155193
Alignment:
| Q |
5 |
ataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtgg |
104 |
Q |
| |
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||||||||| ||||||||| | || | ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| || ||||| ||| |
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| T |
11155410 |
ataaatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgttaacgtga |
11155311 |
T |
|
| Q |
105 |
ttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgca |
204 |
Q |
| |
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|||| |||||| || | ||||| ||||||| ||||||||||||||||| |||||| || || | | |||| |||||| |||||| | ||| ||||||| |
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| T |
11155310 |
ttgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgca |
11155211 |
T |
|
| Q |
205 |
agaaggtactatggttgg |
222 |
Q |
| |
|
||| |||| ||||||||| |
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| T |
11155210 |
agagggtattatggttgg |
11155193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 11195829 - 11195640
Alignment:
| Q |
33 |
tttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaatatta |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||| || ||||| |||||||| |||||| || | ||||| ||||| |
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| T |
11195829 |
tttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgttaacgtggttgcggaacaagaacaatttgagtatta |
11195730 |
T |
|
| Q |
133 |
tagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgcaagaaggtactatggttgg |
222 |
Q |
| |
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|| ||||||||||||||||| |||||| || || | | |||| |||||| |||||| | ||| |||||||||| |||| ||||||||| |
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| T |
11195729 |
tacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgcaagagggtattatggttgg |
11195640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 11165463 - 11165352
Alignment:
| Q |
4 |
cataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtg |
103 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | |||| | |
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| T |
11165463 |
cataaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtctttaagtggcttgaagataataag |
11165364 |
T |
|
| Q |
104 |
gttgcagaacaa |
115 |
Q |
| |
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|||||||||||| |
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| T |
11165363 |
gttgcagaacaa |
11165352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 11242049 - 11242206
Alignment:
| Q |
4 |
cataaatgatccggatattagctcgaagatttcgtcaaaagaaaa--ggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatg |
101 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||| ||| ||||| ||||||||| ||||| |||| | |||||||||| | |||||||| ||||||| |
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|
| T |
11242049 |
cataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-atttggtcttcacatggcttgatgttaatg |
11242147 |
T |
|
| Q |
102 |
tggttgcagaacaacaagattttgaatattatagtagcattctttcaagtgtgtttgat |
160 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
11242148 |
tggttgaagaacaacgagattttgaatgttataggagcattctttcaagtgtgtttgat |
11242206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 11132105 - 11131954
Alignment:
| Q |
28 |
gaagatttcgtcaaaagaaaaggaaaagatcaataacgcaactgatttggtctttaagtggcttgacgttaatgtggttgcagaacaacaagattttgaa |
127 |
Q |
| |
|
|||| |||||| | |||| |||||| |||| ||||| ||| ||||| |||||| ||||||||||| |||||| ||| ||||||||| |||||||| |
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| T |
11132105 |
gaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtcttactgtggcttgacgacaatgtgattgtagaacaacatgattttgag |
11132006 |
T |
|
| Q |
128 |
tattatagtagcattctttcaagtgtgtttgatccaattgttataaagatga |
179 |
Q |
| |
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||||||| | | | |||||||||||||||||||| ||| || | ||||||| |
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| T |
11132005 |
tattatacgaacttactttcaagtgtgtttgatcccattattttgaagatga |
11131954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 11315911 - 11315976
Alignment:
| Q |
143 |
ctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgcaagaa |
208 |
Q |
| |
|
|||||||||||||||||| |||| || | |||| |||||||||||||| ||| ||||||||||| |
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|
| T |
11315911 |
ctttcaagtgtgtttgatggaattattgtgaagaagataaaggatgaggagcatggtgtgcaagaa |
11315976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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