View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_low_32 (Length: 263)

Name: NF18856_low_32
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_low_32
NF18856_low_32
[»] chr2 (5 HSPs)
chr2 (7-251)||(41244431-41244675)
chr2 (159-251)||(41257630-41257722)
chr2 (167-243)||(34622430-34622506)
chr2 (167-243)||(34614943-34615019)
chr2 (7-83)||(41257787-41257863)
[»] chr4 (12 HSPs)
chr4 (7-81)||(23423525-23423599)
chr4 (7-81)||(23448025-23448099)
chr4 (7-81)||(23875354-23875428)
chr4 (170-251)||(24298064-24298145)
chr4 (167-251)||(23423596-23423680)
chr4 (167-251)||(23448096-23448180)
chr4 (167-251)||(23875273-23875357)
chr4 (7-79)||(24298147-24298219)
chr4 (9-79)||(23446673-23446743)
chr4 (7-81)||(26827906-26827980)
chr4 (167-251)||(26827825-26827909)
chr4 (170-234)||(23446745-23446809)
[»] chr8 (2 HSPs)
chr8 (7-79)||(35961690-35961762)
chr8 (170-251)||(35961607-35961688)
[»] chr1 (1 HSPs)
chr1 (7-81)||(12165104-12165178)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 41244431 - 41244675
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaacctgatcataaaattagggttacaaaat 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41244431 ccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaacctgatcataaaattagggttacaaaat 41244530  T
Q  107 caaaattagggttccagaaaattgaaaatcaaagattataagaaagaggatatgaaattcacctcagcagcaagatattcaagaacagcggcgaggtaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41244531 caaaattagggttccagaaaattgaaaatcaaagattataagaatgaggatatgaaattcacctcagcagcaagatattcaagaacagcggcgaggtaaa 41244630  T
Q  207 caggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41244631 caggagcaccagtaccaacacgctgagcgtatcttcctttcttca 41244675  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 159 - 251
Target Start/End: Complemental strand, 41257722 - 41257630
Alignment:
Q  159 tgaaattcacctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41257722 tgaaattcacctcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 41257630  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 34622506 - 34622430
Alignment:
Q  167 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcc 243  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||    
T  34622506 acctcagcggcgagatattcaagaacagcggcgaggtaaacaggagcaccagcaccaacacgttcagcgtattttcc 34622430  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 34615019 - 34614943
Alignment:
Q  167 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcc 243  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||| | ||||||| ||||    
T  34615019 acctcagcagcgagatattcaagaacagcagctaggtaaacaggagcaccagcaccaacacgttcagcgtattttcc 34614943  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 41257863 - 41257787
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaacctga 83  Q
    |||||||||||||||| || || ||||| || |||||||| |||||||| |||||||||||||| ||||||||||||    
T  41257863 ccaacaacacgtgcctagggatgatcctgttcttcttgttgtcacgtgctgcatttccagccaactcaagaacctga 41257787  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 23423525 - 23423599
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaacct 81  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  23423525 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacct 23423599  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 23448025 - 23448099
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaacct 81  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  23448025 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacct 23448099  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 23875428 - 23875354
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaacct 81  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  23875428 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacct 23875354  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 24298145 - 24298064
Alignment:
Q  170 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    ||||||||||||||||||||||| || || ||||| || |||||||| || || ||||||||||||||||||||||||||||    
T  24298145 tcagcagcaagatattcaagaactgctgctaggtataccggagcacctgttccgacacgctgagcgtatcttcctttcttca 24298064  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 23423596 - 23423680
Alignment:
Q  167 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    ||||||||||| |||||||||||||| || || ||||| || |||||||| || || ||||||||||||||||||||||||||||    
T  23423596 acctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttca 23423680  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 23448096 - 23448180
Alignment:
Q  167 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    ||||||||||| |||||||||||||| || || ||||| || |||||||| || || ||||||||||||||||||||||||||||    
T  23448096 acctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttca 23448180  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 23875357 - 23875273
Alignment:
Q  167 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    ||||||||||| |||||||||||||| || || ||||| || |||||||| || || ||||||||||||||||||||||||||||    
T  23875357 acctcagcagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagcgtatcttcctttcttca 23875273  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 24298219 - 24298147
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaac 79  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  24298219 ccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaac 24298147  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 23446673 - 23446743
Alignment:
Q  9 aacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaac 79  Q
    |||||||  ||||||||||| || ||||| |||||||||||||| || |||||||||||||| ||||||||    
T  23446673 aacaacaaatgccttggaataattctattcttcttgttatcacgagctgcatttccagccaactcaagaac 23446743  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 26827980 - 26827906
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaacct 81  Q
    |||||||||  ||||||||||| || ||||| |||||||||||||| || || ||||| ||||||||||||||||    
T  26827980 ccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacct 26827906  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 26827909 - 26827825
Alignment:
Q  167 acctcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    ||||||||||| || ||||||||||| || || |||||||| |||||||| || || ||||||||||| ||||  ||||||||||    
T  26827909 acctcagcagcgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatatcgacctttcttca 26827825  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 23446745 - 23446809
Alignment:
Q  170 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagc 234  Q
    ||||||||||||||||||||||| || || ||||| || |||||||| || || |||||||||||    
T  23446745 tcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc 23446809  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 35961762 - 35961690
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaac 79  Q
    |||||||||| ||||||||||| |||||||| |||||||||||||| || ||||| |||||||||||||||||    
T  35961762 ccaacaacacatgccttggaataatcctattcttcttgttatcacgagcagcattaccagccaattcaagaac 35961690  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 35961688 - 35961607
Alignment:
Q  170 tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagcgtatcttcctttcttca 251  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| || || ||||| ||||| ||||  ||||||||||    
T  35961688 tcagcagcaagatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgttgagcatatcgacctttcttca 35961607  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 12165178 - 12165104
Alignment:
Q  7 ccaacaacacgtgccttggaattatcctatttttcttgttatcacgtgccgcatttccagccaattcaagaacct 81  Q
    |||||||||| ||||||||||| || ||||| |||||||||||||| || |||||||||||||| ||||||||||    
T  12165178 ccaacaacacatgccttggaatgattctattcttcttgttatcacgagctgcatttccagccaactcaagaacct 12165104  T

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