View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18856_low_4 (Length: 659)
Name: NF18856_low_4
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 606; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 18 - 651
Target Start/End: Complemental strand, 43985754 - 43985121
Alignment:
| Q |
18 |
atcttttagctacggaggataaaaccactcaggagaatgcaatctctgctttactgaagctttcaaagtatgcaaccgggcctgaaaatataatagacca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985754 |
atcttttagctacggaggataaaaccactcaggagaatgcaatctctgctttactgaagctttcaaagtatgcaaccgggcctgaaaatataatagacca |
43985655 |
T |
|
| Q |
118 |
taacggtttaaatcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccgtcaaattgcagctgctataatattctatctttgttcagtgaaa |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43985654 |
taacggtttaaagcccgttgtgtatgtactgaaaaatggacttagtcttgaagcccgtcaaattgcagcagctataatattctatctttgttcagtgaaa |
43985555 |
T |
|
| Q |
218 |
gaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaacctgcgggaaaaagaatgcagtggttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43985554 |
gaatatagaaaattaataggtgaaaatcaagatgtgattcatggtttagttgaattggctaaagaaggaacaacctgcggaaaaaagaatgcagtggttg |
43985455 |
T |
|
| Q |
318 |
ccatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgtttctattttgaataccttgtgcaacaa |
417 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985454 |
cgatttttggacttcttttgcttcctaggaatcatcaacgtgtgcttgaagccggtgctgttcacgcgcttgtttctattttgaataccttgtgcaacaa |
43985355 |
T |
|
| Q |
418 |
ggaagagcttgttactgaaactttggctgttcttgcggcacttgctgagaattttgatggagctaatgctgttttggaagcttctgcattgccgttgatt |
517 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43985354 |
ggaagagcttgttactgaaactctggctgttcttgcggcacttgctgagaattttgatggagctaatgctgttttggaagcttctgcattgccgttgatt |
43985255 |
T |
|
| Q |
518 |
gctgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtgttaatggtggtgtggatgttgctggtg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43985254 |
actgggctgttgcgatctgctccttcgcgtgctgcaaaggaacattgtgtttcgatattgttgtctctatgtgttaatggtggtgttgatgttgctggtg |
43985155 |
T |
|
| Q |
618 |
ttcttgctaaggatgttacacttatgcctttgct |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
43985154 |
ttcttgctaaggatgttacacttatgcctttgct |
43985121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 35205912 - 35205835
Alignment:
| Q |
167 |
gaagcccgtcaaattgcagctgctataatattctatctttgttcagtgaaagaatatagaaaattaataggtgaaaat |
244 |
Q |
| |
|
|||||||||| | ||||||||| ||||||||| || || |||||||||||| || |||||||||||||| |||||| |
|
|
| T |
35205912 |
gaagcccgtcgagttgcagctggtataatattttacctcacttcagtgaaagagtacagaaaattaataggcgaaaat |
35205835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University