View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_low_44 (Length: 210)

Name: NF18856_low_44
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_low_44
NF18856_low_44
[»] scaffold0087 (10 HSPs)
scaffold0087 (20-195)||(12475-12650)
scaffold0087 (32-195)||(55115-55278)
scaffold0087 (20-185)||(19519-19684)
scaffold0087 (20-185)||(29867-30032)
scaffold0087 (59-160)||(33899-34000)
scaffold0087 (63-160)||(39950-40047)
scaffold0087 (28-146)||(816-935)
scaffold0087 (28-146)||(15705-15824)
scaffold0087 (59-179)||(5488-5609)
scaffold0087 (59-179)||(22603-22724)
[»] chr6 (25 HSPs)
chr6 (20-195)||(5755431-5755606)
chr6 (20-195)||(5760909-5761084)
chr6 (49-161)||(5882934-5883046)
chr6 (38-161)||(5880206-5880329)
chr6 (62-161)||(5763943-5764042)
chr6 (62-161)||(5767478-5767577)
chr6 (62-161)||(5771013-5771112)
chr6 (62-161)||(5774548-5774647)
chr6 (62-161)||(5778083-5778182)
chr6 (62-161)||(5781618-5781717)
chr6 (62-161)||(5785153-5785252)
chr6 (62-161)||(5788688-5788787)
chr6 (62-161)||(5792223-5792322)
chr6 (62-161)||(5795758-5795857)
chr6 (62-161)||(5799293-5799392)
chr6 (62-161)||(5802828-5802927)
chr6 (62-161)||(5806363-5806462)
chr6 (62-161)||(5809898-5809997)
chr6 (62-161)||(5813433-5813532)
chr6 (62-161)||(5816968-5817067)
chr6 (62-161)||(5820503-5820602)
chr6 (59-160)||(5829827-5829928)
chr6 (62-171)||(5890170-5890279)
chr6 (50-144)||(5826966-5827060)
chr6 (59-158)||(5852773-5852872)


Alignment Details
Target: scaffold0087 (Bit Score: 144; Significance: 7e-76; HSPs: 10)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 12650 - 12475
Alignment:
Q  20 acccgaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaag 119  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  12650 acccgaaaatgatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacattcaagtatctcaaactcgaag 12551  T
Q  120 ataaattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||    
T  12550 ataaattccagaaccatttaggaaatgaatctgaaataccacaattagaaatatttagatcagcaagccccctttg 12475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 32 - 195
Target Start/End: Complemental strand, 55278 - 55115
Alignment:
Q  32 tcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccaga 131  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  55278 tcataatttacattcagactttgtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatctcaaactcgaaggtaaattccaga 55179  T
Q  132 accatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 195  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||    
T  55178 accatttaggaaatgaatctgaaataccacaattagagatatttatatcagtaagccacctttg 55115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 19684 - 19519
Alignment:
Q  20 acccgaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaag 119  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  19684 acccaaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaatatccaagtatgtcaaactcgaag 19585  T
Q  120 ataaattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaa 185  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19584 ataaattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaa 19519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 30032 - 29867
Alignment:
Q  20 acccgaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaag 119  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  30032 acccaaatatcatcataatttacattcagactttgtaaggattttggcaagggtccattgagtttattatgggaaatatccaagtatgtcaaactcgaag 29933  T
Q  120 ataaattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaa 185  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29932 ataaattcccaaaccatttaggaaatgaatctgaaataccacaattagagatatttagataagtaa 29867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 34000 - 33899
Alignment:
Q  59 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 158  Q
    ||||||||||||| ||| || ||| ||||||| ||||||| |||||||  ||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  34000 gattttggcaaggttcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaatac 33901  T
Q  159 ca 160  Q
    ||    
T  33900 ca 33899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 40047 - 39950
Alignment:
Q  63 ttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatacca 160  Q
    |||||||||||||||| ||||||||||  || || | ||||||||||||||| ||||||| |||||| |||||||| |||||||||||| ||||||||    
T  40047 ttggcaagggtccattaagtttgttatacgatacgttcaagtatgtcaaacttgaagatagattccaaaaccattttggaaatgaatctaaaatacca 39950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 935 - 816
Alignment:
Q  28 ataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaatt 126  Q
    |||||||||| |||| ||   |||||| || ||||| |||||||| ||||||||||||||||| ||||||| |||||||  ||||| | |||||||||||    
T  935 ataatcataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaatt 836  T
Q  127 ccagaaccatttaggaaatg 146  Q
    ||| || |||||||| ||||    
T  835 ccaaaatcatttagggaatg 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 15824 - 15705
Alignment:
Q  28 ataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaatt 126  Q
    |||||||||| |||| ||   |||||| || ||||| |||||||| ||||||||||||||||| ||||||| |||||||  ||||| | |||||||||||    
T  15824 ataatcataacttacttttgtacttggaaatgatttcggcaagggaccattgagtttgttatgtgaaacattcaagtattccaaactttgaagataaatt 15725  T
Q  127 ccagaaccatttaggaaatg 146  Q
    ||| || |||||||| ||||    
T  15724 ccaaaatcatttagggaatg 15705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 5609 - 5488
Alignment:
Q  59 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaattccagaaccatttaggaaatgaatctgaaata 157  Q
    ||||| |||||||| ||||||||||||||||| ||||||  |||||||  ||||| | |||||||||||||| || ||||| || ||||||||| ||||     
T  5609 gatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaaaatcatttggggaatgaatctaaaatg 5510  T
Q  158 ccacatttagagatatttagat 179  Q
    ||    ||||||||||||||||    
T  5509 ccgttattagagatatttagat 5488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 22724 - 22603
Alignment:
Q  59 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaac-tcgaagataaattccagaaccatttaggaaatgaatctgaaata 157  Q
    ||||| |||||||| ||||||||||||||||| ||||||  |||||||  ||||| | |||||||||||||| || ||||| || ||||||||| ||||     
T  22724 gatttcggcaagggaccattgagtttgttatgtgaaacaatcaagtattccaaactttgaagataaattccaaaatcattttgggaatgaatctaaaatg 22625  T
Q  158 ccacatttagagatatttagat 179  Q
    ||    ||||||||||||||||    
T  22624 ccgttattagagatatttagat 22603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 5755606 - 5755431
Alignment:
Q  20 acccgaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaag 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  5755606 acccgaatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaatccaagtatttcaaacttgaag 5755507  T
Q  120 ataaattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 195  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5755506 ataaattcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttg 5755431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 5761084 - 5760909
Alignment:
Q  20 acccgaatataatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaag 119  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  5761084 acccgaatatcatcataatttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaaaatccaagtatttcaaacttgaag 5760985  T
Q  120 ataaattccagaaccatttaggaaatgaatctgaaataccacatttagagatatttagataagtaagccccctttg 195  Q
    |||||||||  |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5760984 ataaattcccaaaccatttaggaaatgaatctgaaataccacaattagaaatatttagataagtaagccccctttg 5760909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 161
Target Start/End: Complemental strand, 5883046 - 5882934
Alignment:
Q  49 acttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaa 148  Q
    |||||| || |||||||||||||||||||| ||||||||||| ||||||| |||||||  |||||||||||| | |||||| ||||||||||||| ||||    
T  5883046 acttggaaatgattttggcaagggtccattaagtttgttatgtgaaacattcaagtattccaaactcgaagagagattccaaaaccatttaggaactgaa 5882947  T
Q  149 tctgaaataccac 161  Q
    |||||||||||||    
T  5882946 tctgaaataccac 5882934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 5880329 - 5880206
Alignment:
Q  38 tttacattcagacttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatt 137  Q
    ||||| |||| |||||| ||| ||||||||||| ||||||  ||||||||||| ||||||| |||||||  |||||| ||||||| |||||| |||||||    
T  5880329 tttactttcaaacttggaaagtattttggcaagtgtccatgaagtttgttatgtgaaacattcaagtattgcaaacttgaagatagattccaaaaccatt 5880230  T
Q  138 taggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||||||||||    
T  5880229 taggaaatgaatctgaaataccac 5880206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5764042 - 5763943
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5764042 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5763943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5767577 - 5767478
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5767577 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5767478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5771112 - 5771013
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5771112 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5771013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5774647 - 5774548
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5774647 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5774548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5778182 - 5778083
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5778182 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5778083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5781717 - 5781618
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5781717 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5781618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5785252 - 5785153
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5785252 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5785153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5788787 - 5788688
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5788787 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5788688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5792322 - 5792223
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5792322 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5792223  T

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Target: chr6; HSP #14
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5795857 - 5795758
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5795857 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5795758  T

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Target: chr6; HSP #15
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5799392 - 5799293
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5799392 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5799293  T

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Target: chr6; HSP #16
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5802927 - 5802828
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5802927 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5802828  T

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Target: chr6; HSP #17
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5806462 - 5806363
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5806462 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5806363  T

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Target: chr6; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5809997 - 5809898
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5809997 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5809898  T

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Target: chr6; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5813532 - 5813433
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5813532 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5813433  T

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Target: chr6; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5817067 - 5816968
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5817067 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5816968  T

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Target: chr6; HSP #21
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 5820602 - 5820503
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||| ||||||| ||||| |  ||||| |||||||||||||||||||||||||||||||    
T  5820602 tttggcaagggtccattaagtttgttatatgaaacattcaagtatatcaaacttgaagagaggttccaaaaccatttaggaaatgaatctgaaataccac 5820503  T

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Target: chr6; HSP #22
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 5829928 - 5829827
Alignment:
Q  59 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 158  Q
    ||||||||||||| ||| || ||| ||||||| ||||||| |||||||  ||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  5829928 gattttggcaaggttcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagattccaaaaccatttaggaaatgaatctgaaatac 5829829  T
Q  159 ca 160  Q
    ||    
T  5829828 ca 5829827  T

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Target: chr6; HSP #23
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 5890170 - 5890279
Alignment:
Q  62 tttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaataccac 161  Q
    |||||||| |||||||| |||| |||||| ||||||| |||||||   ||||||||||| | |||||| |||||||||||||||||||| ||||||||||    
T  5890170 tttggcaaaggtccattaagttggttatgtgaaacattcaagtattgtaaactcgaagagagattccaaaaccatttaggaaatgaatccgaaataccac 5890269  T
Q  162 atttagagat 171  Q
    | ||||||||    
T  5890270 aattagagat 5890279  T

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Target: chr6; HSP #24
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 5827060 - 5826966
Alignment:
Q  50 cttggtaaggattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaa 144  Q
    ||||| || |||||||||||||||||||| | ||||||||| ||||||| ||||||   |||||| ||||||| |||||| ||||||||||||||    
T  5827060 cttggaaaagattttggcaagggtccattaattttgttatgtgaaacattcaagtaatgcaaacttgaagatagattccaaaaccatttaggaaa 5826966  T

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Target: chr6; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 59 - 158
Target Start/End: Complemental strand, 5852872 - 5852773
Alignment:
Q  59 gattttggcaagggtccattgagtttgttatgggaaacatccaagtatgtcaaactcgaagataaattccagaaccatttaggaaatgaatctgaaatac 158  Q
    |||||||||||   ||| || ||| ||||||| ||||||| |||||||  ||||||| ||||||  ||||| ||||||||||||||||||||||||||||    
T  5852872 gattttggcaacattcctttaagtatgttatgtgaaacattcaagtatcgcaaactcaaagatagcttccaaaaccatttaggaaatgaatctgaaatac 5852773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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