View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18856_low_6 (Length: 590)
Name: NF18856_low_6
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18856_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 11 - 513
Target Start/End: Complemental strand, 21445247 - 21444745
Alignment:
| Q |
11 |
atcatcaaatggtagagccaaattaagaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcctcaa |
110 |
Q |
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| T |
21445247 |
atcatcaaatggtagagccaaattaagaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcctcaa |
21445148 |
T |
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| Q |
111 |
aggtagtagggtattctctctttaatacaattatcacaaccaaacagaatttggnnnnnnnggtagctttttcaataagctgtattacaaattacaatgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21445147 |
aggtagtagggtattctctctttaatacaattatcacaaccaaacagaatttggtttttttggtagctttttcaataagctgtattacaaattacaatgt |
21445048 |
T |
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| Q |
211 |
cctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatatccaaaaaatat |
310 |
Q |
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| T |
21445047 |
cctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaactttaaggtatcgtttttgcatgaataatatccaaaaaatat |
21444948 |
T |
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| Q |
311 |
atcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataatttagacacattatggtttcaacattatttgacaattttgtt |
410 |
Q |
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| T |
21444947 |
atcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataatttagacacattatggtttcatcattatttgacaattttgtt |
21444848 |
T |
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| Q |
411 |
tctgacttgcactcaccatatcattgttttagcacactggttttaaactatgtacatttcgaaattggtgatgtttgctagtaacatgttactattgtgt |
510 |
Q |
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| T |
21444847 |
tctgacttgcactcaccatatcattgttttagcacactggttttaaactatgtaaatttcgaaattggtgttgtttgctagtaacatgttaatactgtgt |
21444748 |
T |
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| Q |
511 |
ttt |
513 |
Q |
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||| |
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| T |
21444747 |
ttt |
21444745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 510 - 590
Target Start/End: Complemental strand, 21444712 - 21444632
Alignment:
| Q |
510 |
ttttagattctaaaaaataattcaaaatttagatcatctaatcttaatcggactactgaaatacgcgtaactacggtactc |
590 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21444712 |
ttttagattctaaaaaataatttaaaatttggatcatctaatcttaatcggactactgaaatacgcgtaactacggtactc |
21444632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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