View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18856_low_9 (Length: 505)

Name: NF18856_low_9
Description: NF18856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18856_low_9
NF18856_low_9
[»] chr2 (17 HSPs)
chr2 (1-329)||(6915171-6915499)
chr2 (78-176)||(10543505-10543603)
chr2 (78-176)||(10471307-10471405)
chr2 (78-176)||(28106207-28106305)
chr2 (96-176)||(27966389-27966469)
chr2 (78-176)||(10859023-10859121)
chr2 (189-245)||(10492777-10492833)
chr2 (188-240)||(28105350-28105402)
chr2 (182-245)||(10463585-10463648)
chr2 (182-229)||(10507349-10507396)
chr2 (194-245)||(10860707-10860758)
chr2 (183-245)||(10474161-10474223)
chr2 (189-245)||(7476566-7476622)
chr2 (194-245)||(10848803-10848854)
chr2 (97-159)||(9081351-9081413)
chr2 (188-245)||(7478731-7478788)
chr2 (105-169)||(10505487-10505551)
[»] chr8 (2 HSPs)
chr8 (335-487)||(8286628-8286780)
chr8 (193-244)||(44307022-44307073)
[»] chr7 (4 HSPs)
chr7 (78-176)||(15044800-15044898)
chr7 (178-249)||(15045570-15045641)
chr7 (5-81)||(15043985-15044061)
chr7 (276-329)||(15047553-15047606)
[»] chr4 (2 HSPs)
chr4 (335-382)||(46625107-46625154)
chr4 (408-440)||(46625163-46625195)
[»] chr5 (1 HSPs)
chr5 (78-176)||(33601026-33601124)


Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 6915499 - 6915171
Alignment:
Q  1 ttaactgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaaccttctcctcattcttggattg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915499 ttaactgaccaaacttcgtttgctccaacttgaaagccaatgctacaagaggcccatcgggacttccagtcagctgaaccttctcctcattcttggattg 6915400  T
Q  101 gtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtacccccgtgtttttgacagcactacccatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915399 gtcaagagcataattactaacttcaatcggacaaggcaaataactaactacaccatccagaagtggttgtacccccgtgtttttgacagcactacccatg 6915300  T
Q  201 aataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatcatcgctaagaaacgcttcagcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6915299 aataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatcatcactaagaaacgcttcagcaa 6915200  T
Q  301 gtacatcatctacctctgacacaggttct 329  Q
    |||||||||||||||||||||||| ||||    
T  6915199 gtacatcatctacctctgacacagtttct 6915171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 10543505 - 10543603
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| |||||||||||||||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10543505 accttttcctcattcttggattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtaacccc 10543603  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 10471307 - 10471405
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||||||||||| |||||| | ||||||||||||||| ||||| | ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  10471307 accttttcctcattcttagattggacgagagcataattactagcttcagttggacacggcaaataattaagtacaccatccaaaagtagttgtagcccc 10471405  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 28106305 - 28106207
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||| ||| ||| ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  28106305 accttttccccatgcttagattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 28106207  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 27966389 - 27966469
Alignment:
Q  96 gattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||||| ||| ||||||||||| |||| |||||| ||||    
T  27966389 gattggtcaagagtataattactagcttcaattggacacggcaaataattaattacaccatccaaaagtagttgtagcccc 27966469  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 10859023 - 10859121
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||| ||||||| |||| ||| |||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||| |||| |||||| ||||    
T  10859023 accttttccccattcttagatttgtcgagagaataattactaacttcagttggacagggcaaataattagttacaccatccaaaagtagttgtagcccc 10859121  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  189 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 245  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  188 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 240  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  182 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 245  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  182 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 229  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  194 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 245  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  183 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 245  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  189 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 245  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  194 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 245  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 9081413 - 9081351
Alignment:
Q  97 attggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatcca 159  Q
    ||||||| || |||||||||||  ||||||| ||||| ||||||||| ||| |||||||||||    
T  9081413 attggtcgagcgcataattacttgcttcaattggacacggcaaataattaagtacaccatcca 9081351  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  188 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 245  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 10505487 - 10505551
Alignment:
Q  105 agagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttg 169  Q
    ||||||||||||||| ||||| | ||||| ||||||||| |||  |||||||||| |||| ||||    
T  10505487 agagcataattactagcttcagttggacacggcaaataattaagcacaccatccaaaagtagttg 10505551  T

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Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 335 - 487
Target Start/End: Original strand, 8286628 - 8286780
Alignment:
Q  335 ttcactgatcccatggtagcacacacaaacaaagcaaaaaggacttaattgagcataatactacataaatcagctatgagccagtcctcagtcacacaac 434  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  8286628 ttcactgatcccatggtagaaaacaaaaacaaagcaaaaaggacttaattgagcataatactacataaattagctatgaaccagtcctcagtcacacaac 8286727  T
Q  435 caaacagaaaccaaagcaaaatcaaaatatcagagccaaacctcagtcattat 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8286728 caaacagaaaccaaagcaaaatcaaaatatcagagccaaacctcagtcattat 8286780  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  193 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 244  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 15044800 - 15044898
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||||||||| || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||    
T  15044800 accttctcctccttattagattggtcaagggcataattattaacttcaattggacatggcaaataactaagtacaccatccagaagtggttgtatcccc 15044898  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  178 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 249  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 15043985 - 15044061
Alignment:
Q  5 ctgaccaaacttcctttgctccaacttgaaagccaatgctacaaggggcccatcgggacttccagtcagctgaacct 81  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| | |||| ||||| |||||    
T  15043985 ctgaccaaacttactttcctccaacttgaaagccaatgctacaaggggcccatcaggattaccaggcagctcaacct 15044061  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  276 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 329  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 382
Target Start/End: Original strand, 46625107 - 46625154
Alignment:
Q  335 ttcactgatcccatggtagcacacacaaacaaagcaaaaaggacttaa 382  Q
    ||||||||||||||||||||||||| ||||||| || |||||| ||||    
T  46625107 ttcactgatcccatggtagcacacaaaaacaaatcagaaaggaattaa 46625154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 440
Target Start/End: Original strand, 46625163 - 46625195
Alignment:
Q  408 ctatgagccagtcctcagtcacacaaccaaaca 440  Q
    |||| ||||||||||||||||||||||||||||    
T  46625163 ctattagccagtcctcagtcacacaaccaaaca 46625195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 33601026 - 33601124
Alignment:
Q  78 accttctcctcattcttggattggtcaagagcataattactaacttcaatcggacaaggcaaataagtaactacaccatccagaagtggttgtaccccc 176  Q
    ||||| ||||||||||| ||||||   |||||||||||| |  ||||| | ||||| ||||||| | |||  |||||||||| ||||||||||| ||||    
T  33601026 accttttcctcattcttagattggatgagagcataattagttgcttcagttggacacggcaaattattaagcacaccatccaaaagtggttgtagcccc 33601124  T

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